Query 537021.9.peg.330_1
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 18:54:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_330.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kji_A Probable insulin-like p 15.8 47 0.002 16.1 1.3 13 24-36 35-47 (50)
2 3l9s_A Thiol:disulfide interch 6.6 1.1E+02 0.0045 14.4 0.5 25 7-31 8-36 (191)
3 2au5_A Conserved domain protei 5.1 1.8E+02 0.0077 13.3 1.0 12 24-35 121-132 (139)
4 1un2_A DSBA, thiol-disulfide i 4.9 1.3E+02 0.0053 14.1 0.1 30 7-36 100-133 (197)
5 2ou1_A Apolipoprotein A-II; hi 4.6 47 0.002 16.1 -2.3 10 4-13 53-62 (77)
6 1w8x_N Protein P31, protein C, 4.0 1.7E+02 0.0072 13.4 0.1 13 13-25 105-117 (126)
7 1a2x_B Troponin I; muscle cont 3.6 3E+02 0.013 12.3 1.1 10 32-41 15-24 (47)
8 3ky8_A Putative riboflavin bio 2.9 79 0.0033 15.0 -2.5 29 6-34 124-152 (197)
9 1b33_N Phycobilisome 7.8 KD li 2.8 2.7E+02 0.011 12.5 0.1 14 3-16 42-55 (67)
10 1sgv_A TRNA pseudouridine synt 2.8 2E+02 0.0085 13.1 -0.5 32 10-41 154-186 (316)
No 1
>2kji_A Probable insulin-like peptide beta-type 5; hormone, C. elegans, folding, cleavage on PAIR of basic residues, disulfide bond, secreted; NMR {Caenorhabditis elegans}
Probab=15.80 E-value=47 Score=16.12 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=10.2
Q ss_pred HHCCCCHHHHHHH
Q ss_conf 2137556899998
Q 537021.9.peg.3 24 FSFGCSDEFILKS 36 (43)
Q Consensus 24 fsfgcsdefilks 36 (43)
-+--||||||-++
T Consensus 35 C~~qCsd~yIr~~ 47 (50)
T 2kji_A 35 CGNQCSDDYIRSA 47 (50)
T ss_dssp TTTCCCHHHHHHH
T ss_pred HCCCCCHHHHHHH
T ss_conf 3140889999883
No 2
>3l9s_A Thiol:disulfide interchange protein DSBA; thioredoxin-fold, thiol-disulfide oxidoreductase, disulfide bond, periplasm; 1.58A {Salmonella enterica subsp} PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=6.60 E-value=1.1e+02 Score=14.40 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=14.7
Q ss_pred CCCC--EE--EECCCCCCHHHHHCCCCHH
Q ss_conf 3870--57--5227765403321375568
Q 537021.9.peg.3 7 AGTD--VL--DIEGDKSIPSFFSFGCSDE 31 (43)
Q Consensus 7 agtd--vl--diegdksipsffsfgcsde 31 (43)
-|.| +| .+.++-.|-.||+|.|..-
T Consensus 8 eg~~y~~~~~p~~~~~~vvEf~dy~Cp~C 36 (191)
T 3l9s_A 8 DGKQYITLDKPVAGEPQVLEFFSFYCPHC 36 (191)
T ss_dssp BTTTEEECSSCCCSSSCEEEEECTTCHHH
T ss_pred CCCCEEECCCCCCCCCEEEEEECCCCCCH
T ss_conf 69980788899999967999988888405
No 3
>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} SCOP: a.244.1.1
Probab=5.13 E-value=1.8e+02 Score=13.32 Aligned_cols=12 Identities=58% Similarity=1.004 Sum_probs=7.7
Q ss_pred HHCCCCHHHHHH
Q ss_conf 213755689999
Q 537021.9.peg.3 24 FSFGCSDEFILK 35 (43)
Q Consensus 24 fsfgcsdefilk 35 (43)
|-.-|+||||..
T Consensus 121 ~LLL~~DE~I~~ 132 (139)
T 2au5_A 121 FLLLCSDEFIMY 132 (139)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHHCCHHHHHH
T ss_conf 999804699884
No 4
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=4.93 E-value=1.3e+02 Score=14.06 Aligned_cols=30 Identities=23% Similarity=0.539 Sum_probs=18.4
Q ss_pred CCCCEEEE----CCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 38705752----2776540332137556899998
Q 537021.9.peg.3 7 AGTDVLDI----EGDKSIPSFFSFGCSDEFILKS 36 (43)
Q Consensus 7 agtdvldi----egdksipsffsfgcsdefilks 36 (43)
.|.|--.+ .+.-.|--||+|+|.--+-...
T Consensus 100 eG~~Y~~l~~p~~~~~~VvEff~y~CphC~~~e~ 133 (197)
T 1un2_A 100 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEE 133 (197)
T ss_dssp BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHH
T ss_pred CCCCCEECCCCCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 9987557788899996699998169931655627
No 5
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=4.64 E-value=47 Score=16.11 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=6.7
Q ss_pred EECCCCCEEE
Q ss_conf 4103870575
Q 537021.9.peg.3 4 VQKAGTDVLD 13 (43)
Q Consensus 4 vqkagtdvld 13 (43)
|+|||||.++
T Consensus 53 vkkagtdl~n 62 (77)
T 2ou1_A 53 IKKAGTELVN 62 (77)
T ss_dssp HHTHHHHTTC
T ss_pred HHHHHHHHHH
T ss_conf 9996158999
No 6
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=3.99 E-value=1.7e+02 Score=13.44 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=9.7
Q ss_pred EECCCCCCHHHHH
Q ss_conf 5227765403321
Q 537021.9.peg.3 13 DIEGDKSIPSFFS 25 (43)
Q Consensus 13 diegdksipsffs 25 (43)
.+.|.||.|-||-
T Consensus 105 ~~~GKks~P~~Fl 117 (126)
T 1w8x_N 105 LGSGKKSVPLFFL 117 (126)
T ss_dssp EEEESSCCCCSCC
T ss_pred CCCCCCCEEEEEE
T ss_conf 0688721026898
No 7
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=3.56 E-value=3e+02 Score=12.28 Aligned_cols=10 Identities=50% Similarity=0.614 Sum_probs=7.6
Q ss_pred HHHHHHHHHH
Q ss_conf 9999877762
Q 537021.9.peg.3 32 FILKSLIIQI 41 (43)
Q Consensus 32 filksliiqi 41 (43)
--|||+..||
T Consensus 15 qHLKS~MLQi 24 (47)
T 1a2x_B 15 QHLKSVMLQI 24 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 8
>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=2.89 E-value=79 Score=15.03 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=20.1
Q ss_pred CCCCCEEEECCCCCCHHHHHCCCCHHHHH
Q ss_conf 03870575227765403321375568999
Q 537021.9.peg.3 6 KAGTDVLDIEGDKSIPSFFSFGCSDEFIL 34 (43)
Q Consensus 6 kagtdvldiegdksipsffsfgcsdefil 34 (43)
+.|...+-++|-..+-+|+.-|+-||+.+
T Consensus 124 ~~g~~~i~igGg~~~~~~l~~gLvDEl~l 152 (197)
T 3ky8_A 124 AKGFNELYIDGGVTIQNFLKEDLIDEMVI 152 (197)
T ss_dssp HTTCCEEEEESHHHHHHHHHTTCCCEEEE
T ss_pred HCCCCEEEECCCCCCHHHHHCCCCCEEEE
T ss_conf 67996699816761100120688755799
No 9
>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1
Probab=2.76 E-value=2.7e+02 Score=12.51 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.2
Q ss_pred EEECCCCCEEEECC
Q ss_conf 34103870575227
Q 537021.9.peg.3 3 RVQKAGTDVLDIEG 16 (43)
Q Consensus 3 rvqkagtdvldieg 16 (43)
|.||+|-.++..|-
T Consensus 42 rIqK~GGkI~KVeL 55 (67)
T 1b33_N 42 RIQKMGGKIVKVEL 55 (67)
T ss_dssp HHHHTTCEEEEEEE
T ss_pred HHHHHCCEEEEEEE
T ss_conf 99981880899998
No 10
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: b.122.1.1 d.265.1.2
Probab=2.75 E-value=2e+02 Score=13.11 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=0.0
Q ss_pred CEEEECCCCCCHHH-HHCCCCHHHHHHHHHHHH
Q ss_conf 05752277654033-213755689999877762
Q 537021.9.peg.3 10 DVLDIEGDKSIPSF-FSFGCSDEFILKSLIIQI 41 (43)
Q Consensus 10 dvldiegdksipsf-fsfgcsdefilksliiqi 41 (43)
++++++.+...|.+ |..-||..+-+.||+-.|
T Consensus 154 ~l~~~~~~~~~p~~~~~v~Cs~GTYIRsLa~Di 186 (316)
T 1sgv_A 154 ELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 (316)
T ss_dssp EEEEEEEETTEEEEEEEEEESCCTTHHHHHHHH
T ss_pred EEEEECCCCCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 999731667770589999978950799999999
Done!