RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.330_1
         (43 letters)



>gnl|CDD|133092 cd06234, M14_Nna1_like_1, A bacterial subgroup of the Peptidase
           M14-like domain of Nna-1 (Nervous system Nuclear protein
           induced by Axotomy), also known as ATP/GTP binding
           protein (AGTPBP-1) and cytosolic carboxypeptidase
           (CCP)-like proteins. The Peptidase M14 family of
           metallocarboxypeptidases are zinc-binding
           carboxypeptidases (CPs) which hydrolyze single,
           C-terminal amino acids from polypeptide chains, and have
           a recognition site for the free C-terminal carboxyl
           group, which is a key determinant of specificity.
           Nna1-like proteins are active metallopeptidases that are
           thought to act on cytosolic proteins (such as
           alpha-tubulin in eukaryotes) to remove a C-terminal
           tyrosine. Nna1-like proteins from the different phyla
           are highly diverse, but they all contain a unique
           N-terminal conserved domain right before the CP domain.
           It has been suggested that this N-terminal domain might
           act as a folding domain.
          Length = 263

 Score = 25.7 bits (57), Expect = 2.8
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 3   RVQKAGTD-VLDIEGDKSIPSFFSFGCS 29
           R+++ G D  LD+ GD+++P  F  G  
Sbjct: 145 RMEETGVDFFLDVHGDEALPYNFIAGSE 172


>gnl|CDD|33652 COG3862, COG3862, Uncharacterized protein with conserved CXXC
          pairs [Function unknown].
          Length = 117

 Score = 24.5 bits (53), Expect = 6.9
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 2  VRVQKAGTDVLDIEGDKSIPSFFSFGCSDE 31
          VRV+     V+ ++ +K IP         E
Sbjct: 52 VRVKNGELPVVPVKTEKPIPKELIPELMKE 81


>gnl|CDD|34743 COG5142, OXR1, Oxidation resistance protein [DNA replication,
           recombination, and repair].
          Length = 212

 Score = 23.8 bits (51), Expect = 9.3
 Identities = 5/11 (45%), Positives = 6/11 (54%)

Query: 21  PSFFSFGCSDE 31
           P F +FGC   
Sbjct: 158 PDFLAFGCGGG 168


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.146    0.416 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 501,116
Number of extensions: 15139
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 5
Length of query: 43
Length of database: 6,263,737
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,896,384
Effective search space: 153305984
Effective search space used: 153305984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)