RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.330_1 (43 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 25.0 bits (53), Expect = 4.5 Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 4/21 (19%) Query: 3 RVQKAGTDVLDIEGDKSIPSF 23 ++Q + L + D S P+ Sbjct: 24 KLQAS----LKLYADDSAPAL 40 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.146 0.416 Gapped Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 349,915 Number of extensions: 8877 Number of successful extensions: 23 Number of sequences better than 10.0: 1 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 1 Length of query: 43 Length of database: 5,693,230 Length adjustment: 16 Effective length of query: 27 Effective length of database: 5,305,326 Effective search space: 143243802 Effective search space used: 143243802 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.8 bits)