BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.330_1
         (43 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.330_1 
          Length = 43

 Score = 85.9 bits (211), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MVRVQKAGTDVLDIEGDKSIPSFFSFGCSDEFILKSLIIQIFL 43
          MVRVQKAGTDVLDIEGDKSIPSFFSFGCSDEFILKSLIIQIFL
Sbjct: 1  MVRVQKAGTDVLDIEGDKSIPSFFSFGCSDEFILKSLIIQIFL 43


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 20.4 bits (41), Expect = 5.6,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 13  DIEGDKSIPSFFSFGCSDEFILK 35
           DI+ DKS+ S+ +    D  +++
Sbjct: 358 DIDPDKSLASYLTGSSGDSLMVR 380


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 20.4 bits (41), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 10  DVLDIEGDKSIP 21
           D L+ EG+KSIP
Sbjct: 792 DPLESEGNKSIP 803


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.146    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,896
Number of Sequences: 1233
Number of extensions: 616
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 43
length of database: 328,796
effective HSP length: 16
effective length of query: 27
effective length of database: 309,068
effective search space:  8344836
effective search space used:  8344836
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 31 (16.5 bits)