Query 537021.9.peg.34_1 Match_columns 208 No_of_seqs 193 out of 5626 Neff 6.0 Searched_HMMs 39220 Date Wed May 25 16:33:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_34.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK13581 D-3-phosphoglycerate 100.0 0 0 497.3 19.3 207 1-207 198-405 (524) 2 KOG0068 consensus 100.0 0 0 341.7 9.7 195 1-197 206-406 (406) 3 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.5E-44 0 299.0 14.6 206 1-206 200-411 (535) 4 PRK11790 D-3-phosphoglycerate 100.0 1.4E-45 0 306.3 7.4 160 1-160 209-379 (409) 5 COG0111 SerA Phosphoglycerate 100.0 8.6E-42 0 281.9 9.4 118 1-120 203-321 (324) 6 PRK13243 glyoxylate reductase; 100.0 1.2E-41 0 281.1 8.6 119 1-119 210-328 (333) 7 PRK08605 D-lactate dehydrogena 100.0 1.9E-40 4.2E-45 273.5 8.7 113 1-113 206-332 (332) 8 PRK12480 D-lactate dehydrogena 100.0 1.2E-39 2.9E-44 268.6 8.3 113 1-113 204-330 (330) 9 PRK07574 formate dehydrogenase 100.0 4.3E-39 1.1E-43 265.0 9.5 112 1-112 254-366 (385) 10 PRK06487 glycerate dehydrogena 100.0 2.4E-38 6E-43 260.4 8.0 112 1-113 203-317 (317) 11 PRK06932 glycerate dehydrogena 100.0 4.9E-38 1.2E-42 258.4 7.6 107 1-107 203-314 (314) 12 COG1052 LdhA Lactate dehydroge 100.0 8.9E-37 2.3E-41 250.5 8.8 114 1-114 206-323 (324) 13 PRK08410 2-hydroxyacid dehydro 100.0 1.5E-36 3.9E-41 249.1 8.2 106 1-107 202-311 (311) 14 PRK06436 glycerate dehydrogena 100.0 1.4E-35 3.7E-40 243.0 8.0 111 1-114 179-290 (303) 15 KOG0069 consensus 100.0 1.1E-33 2.8E-38 231.2 8.2 113 1-113 223-335 (336) 16 PRK00257 erythronate-4-phospha 100.0 1.6E-31 4.1E-36 217.7 9.0 111 1-112 173-287 (379) 17 pfam02826 2-Hacid_dh_C D-isome 100.0 8.4E-30 2.1E-34 206.9 5.4 81 1-81 95-176 (176) 18 pfam00389 2-Hacid_dh D-isomer 100.0 1.6E-28 4.2E-33 198.8 7.7 112 2-113 201-313 (313) 19 KOG0067 consensus 99.4 6.7E-13 1.7E-17 101.2 4.7 109 1-114 239-350 (435) 20 PTZ00311 phosphoenolpyruvate c 93.6 0.33 8.5E-06 28.0 6.6 99 3-104 413-526 (543) 21 TIGR00719 sda_beta L-serine de 92.9 0.068 1.7E-06 32.3 2.2 75 128-204 21-98 (208) 22 cd00484 PEPCK_ATP Phosphoenolp 88.1 2.3 5.8E-05 22.8 7.0 39 7-48 228-275 (508) 23 PRK09344 phosphoenolpyruvate c 87.9 2.3 5.9E-05 22.7 7.0 12 10-21 245-256 (525) 24 pfam03315 SDH_beta Serine dehy 81.6 2.7 6.8E-05 22.4 4.3 55 134-188 15-73 (148) 25 cd01919 PEPCK Phosphoenolpyruv 75.6 6.9 0.00018 19.8 5.8 24 163-186 430-453 (515) 26 cd00401 AdoHcyase S-adenosyl-L 64.8 5.6 0.00014 20.4 2.5 41 5-49 45-85 (413) 27 pfam00670 AdoHcyase_NAD S-aden 64.3 5.2 0.00013 20.6 2.2 34 9-42 88-122 (162) 28 PRK05476 S-adenosyl-L-homocyst 63.3 5.8 0.00015 20.3 2.3 35 9-43 273-308 (427) 29 pfam01262 AlaDh_PNT_C Alanine 62.8 5.4 0.00014 20.4 2.1 25 33-58 28-52 (150) 30 PTZ00075 S-adenosyl-L-homocyst 62.2 6.1 0.00016 20.1 2.3 35 9-43 319-354 (476) 31 PRK09424 pntA NAD(P) transhydr 61.4 6.6 0.00017 19.9 2.4 43 14-58 76-118 (510) 32 pfam05221 AdoHcyase S-adenosyl 61.1 7.3 0.00019 19.6 2.5 24 9-32 275-298 (430) 33 TIGR00936 ahcY adenosylhomocys 52.5 9.8 0.00025 18.8 2.0 128 9-151 276-416 (422) 34 COG0686 Ald Alanine dehydrogen 49.7 11 0.00027 18.6 1.8 105 25-143 32-148 (371) 35 cd01171 YXKO-related B.subtili 47.9 3.7 9.5E-05 21.4 -0.7 58 21-82 76-138 (254) 36 COG0499 SAM1 S-adenosylhomocys 46.5 17 0.00043 17.4 2.5 44 8-51 273-318 (420) 37 pfam01293 PEPCK_ATP Phosphoeno 46.1 21 0.00053 16.8 2.9 164 9-176 231-437 (451) 38 TIGR01465 cobM_cbiF precorrin- 41.8 20 0.00051 16.9 2.2 39 12-50 34-73 (252) 39 pfam09692 Arb1 Argonaute siRNA 41.8 28 0.00071 16.0 3.0 72 33-106 82-158 (392) 40 COG3288 PntA NAD/NADP transhyd 35.8 24 0.00062 16.4 1.9 26 94-119 103-128 (356) 41 TIGR01616 nitro_assoc nitrogen 33.7 16 0.00041 17.5 0.7 43 96-141 40-85 (131) 42 COG1606 ATP-utilizing enzymes 30.6 42 0.0011 14.9 5.3 82 19-104 12-110 (269) 43 pfam03446 NAD_binding_2 NAD bi 30.3 43 0.0011 14.8 2.8 12 111-122 91-102 (163) 44 KOG0046 consensus 27.9 47 0.0012 14.6 2.3 35 3-42 142-179 (627) 45 TIGR01123 ilvE_II branched-cha 27.3 36 0.00091 15.3 1.6 129 66-203 92-253 (329) 46 PRK13937 phosphoheptose isomer 26.8 31 0.00079 15.7 1.2 30 178-207 120-149 (192) 47 cd06309 PBP1_YtfQ_like Peripla 26.4 48 0.0012 14.5 2.1 153 26-197 32-210 (273) 48 COG2306 Predicted RNA-binding 26.0 41 0.0011 14.9 1.7 18 91-108 144-161 (183) 49 PRK00414 gmhA phosphoheptose i 23.8 37 0.00093 15.3 1.1 29 179-207 122-150 (192) 50 PRK13936 phosphoheptose isomer 23.8 34 0.00085 15.5 0.9 31 177-207 120-150 (197) 51 TIGR00289 TIGR00289 conserved 23.2 48 0.0012 14.5 1.6 100 25-136 4-115 (227) 52 COG2875 CobM Precorrin-4 methy 23.1 58 0.0015 14.0 2.5 39 11-49 37-76 (254) 53 TIGR01077 L13_A_E ribosomal pr 22.9 42 0.0011 14.9 1.3 22 166-189 13-34 (144) 54 TIGR00151 ispF 2C-methyl-D-ery 22.8 58 0.0015 14.0 3.9 87 39-155 49-135 (159) 55 cd05006 SIS_GmhA Phosphoheptos 22.1 38 0.00096 15.2 0.9 28 179-206 112-139 (177) 56 TIGR00625 tfb2 Transcription f 21.5 61 0.0016 13.9 1.9 55 70-128 366-441 (507) 57 TIGR01326 OAH_OAS_sulfhy O-ace 21.4 62 0.0016 13.8 3.0 70 76-158 284-361 (434) 58 PRK10886 DnaA initiator-associ 21.4 42 0.0011 14.9 1.0 30 178-207 119-148 (196) 59 pfam08745 UPF0278 UPF0278 fami 20.4 65 0.0017 13.7 3.3 59 116-174 46-108 (206) 60 KOG1370 consensus 20.2 66 0.0017 13.7 1.8 26 8-33 278-303 (434) No 1 >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional Probab=100.00 E-value=0 Score=497.33 Aligned_cols=207 Identities=49% Similarity=0.761 Sum_probs=203.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||++|||.++||+++|||++|||| T Consensus 198 lH~Plt~eT~~li~~~~~~~MK~ga~lIN~aRG~iVde~aL~~AL~~g~i~gAalDVf~~EP~~~~pL~~~~nvi~TPHi 277 (524) T PRK13581 198 LHTPLTPETRNLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPATDSPLFGLPNVIVTPHL 277 (524) T ss_pred ECCCCCHHHHHHCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCEEECCCC T ss_conf 93678615544307999960689986997488760589999999964997659972467789997566179988887878 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC Q ss_conf 10139999999999999999986038862001000134445466536999999999999997258851489998143011 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAV 160 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~G~la~ 160 (208) ||+|.|||++++.++|+||++||+|+.++|+||+|+++++.++.++||++|+||||+|++|+.++++++|+|+|+|+++. T Consensus 278 GasT~EAq~~va~~~a~~v~~~l~~~~~~~avN~p~~~~~~~~~~~pyl~Lae~lG~~~~ql~~~~~~~i~i~y~G~~~~ 357 (524) T PRK13581 278 GASTEEAQENVAIQVAEQVIDALLGGPVPNAVNLPSVTAEVAEKLKPYLELAEKLGSLAGQLTDGPIKKIEVTYRGELAD 357 (524) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC T ss_conf 76559999999999999999997589977426578788567787788999999999999987158973899999875233 Q ss_pred CCCHHHHHHHHHHHHH-HCCCCCCEEEHHHHHHHCCEEEEEEEECCCC Q ss_conf 1434789999999886-4067861677889999559089999603568 Q 537021.9.peg.3 161 MNTMVLNSAVLAGIVR-VWRVGANIISAPIIIKENAIILSTIKRDKSG 207 (208) Q Consensus 161 ~~t~~l~~a~lkGlL~-~~~~~VN~VNA~~iA~erGI~v~e~~~~~sG 207 (208) +++++|+.++|||+|+ ...++||||||+.+|+||||+|+|+++++++ T Consensus 358 ~~~~~lt~a~lkG~L~~~~~~~VN~VNA~~lAkerGI~v~e~k~~~~~ 405 (524) T PRK13581 358 YDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGIEVEETKSEESG 405 (524) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEEECCCCC T ss_conf 442489999999987765225465002489999759469999757788 No 2 >KOG0068 consensus Probab=100.00 E-value=0 Score=341.70 Aligned_cols=195 Identities=36% Similarity=0.557 Sum_probs=179.7 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC---CCHHHCCCCCHHH Q ss_conf 9577984570755879998389980999848502214889763221356401432375311323---3201045420021 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL---QNPLFGLPNVFCA 77 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~---~~~l~~~~nvi~T 77 (208) ||+||||+|++|+|+++|++||+|+++||+|||++|||.||++||+||+++|||+|||+.|||. ++.|.+||||+.| T Consensus 206 lH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~T 285 (406) T KOG0068 206 LHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVT 285 (406) T ss_pred ECCCCCCCHHHCCCHHHHHHHHCCCEEEEECCCCEECHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHCCCCEEEC T ss_conf 81678821431138789998607858998247752063999988852862433652156888864126787449853532 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEE Q ss_conf 0201013999999999999999998603886200100013444546653699999999999999725885--14899981 Q 537021.9.peg.3 78 PYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESI--QEIQIIYD 155 (208) Q Consensus 78 PHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~--~~I~i~~~ 155 (208) ||+|+||.|||.+++.++++++.+|+++ ....+||+|.++.+.+++.+||+-|+|+||+++.|+..+.- ..+..+|. T Consensus 286 pHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~ 364 (406) T KOG0068 286 PHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEVALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYK 364 (406) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH T ss_conf 7656325989988899999999998525-764243024403434201462369999986450997517865035542012 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEHHHHHHHCCEE Q ss_conf 430111434789999999886406-786167788999955908 Q 537021.9.peg.3 156 GSTAVMNTMVLNSAVLAGIVRVWR-VGANIISAPIIIKENAII 197 (208) Q Consensus 156 G~la~~~t~~l~~a~lkGlL~~~~-~~VN~VNA~~iA~erGI~ 197 (208) - +...|+.++.+-+.+|+.+++. -.+|+|||+.++++||+. T Consensus 365 s-~~~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r~l~ 406 (406) T KOG0068 365 S-FSDGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQRGLY 406 (406) T ss_pred H-CCCCCEEEEHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCC T ss_conf 2-03566123588775257225789988876242566652369 No 3 >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236 This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process. Probab=100.00 E-value=1.5e-44 Score=298.97 Aligned_cols=206 Identities=42% Similarity=0.666 Sum_probs=201.4 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----CCHHHCCCCCH Q ss_conf 9577984570755879998389980999848502214889763221356401432375311323-----32010454200 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-----QNPLFGLPNVF 75 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-----~~~l~~~~nvi 75 (208) +|+|+|++|+++++++.++++|+|.+++||+||+++||.+|+++++.|++.++++|||..||+. ++|++.+++++ T Consensus 200 ~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~l~~~~~~g~~~~~~~d~~~~~p~~p~~~~~~~l~~~~~~~ 279 (535) T TIGR01327 200 LHTPLTPETKGLIGAEELAKLKPGVIIVNCARGGLIDEAALYEALEEGHVGGAALDVFEKEPPTPFIGEDNPLLDLDNVV 279 (535) T ss_pred EECCCCCHHHHHCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHEEEHHCCCCCCCCCCCCHHHHCCCCCE T ss_conf 63366602332103256664047606985034663206889987631310010000000257754324410121022101 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 21020101399999999999999999860388620010001344454665369999999999999972588514899981 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYD 155 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~ 155 (208) .|||+|++|.|+|.+++..+++++.+++.|...++++|.|.++......++||+.|++++|.++.|+.++.+.++++.|+ T Consensus 280 ~~ph~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 359 (535) T TIGR01327 280 LTPHLGASTEEAQENVGLDVAEEVLDALKGLPVPNAVNLPGLDPDVLEKLKPYLDLAEKLGKLAGQLLGGGVRKVEVTYR 359 (535) T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 11344542146677778888999999860331000102566564556766678888887777887640453203677750 Q ss_pred CCCCCCCCHHHHHHHHHHHHH-HCCCCCCEEEHHHHHHHCCEEEEEEEECCC Q ss_conf 430111434789999999886-406786167788999955908999960356 Q 537021.9.peg.3 156 GSTAVMNTMVLNSAVLAGIVR-VWRVGANIISAPIIIKENAIILSTIKRDKS 206 (208) Q Consensus 156 G~la~~~t~~l~~a~lkGlL~-~~~~~VN~VNA~~iA~erGI~v~e~~~~~s 206 (208) |+++..++.+++.++++|+++ .+.+.+|++||+.++++|||.+.+.+.+++ T Consensus 360 g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 411 (535) T TIGR01327 360 GELAELETEPLTRALLKGLLKPVLDDEVNLVNAPALAKERGITVEESKSESS 411 (535) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC T ss_conf 4311100257889998877644311211000001233202522453011135 No 4 >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional Probab=100.00 E-value=1.4e-45 Score=306.29 Aligned_cols=160 Identities=36% Similarity=0.515 Sum_probs=137.4 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC-----CHHHCCCCCH Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233-----2010454200 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQ-----NPLFGLPNVF 75 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~-----~~l~~~~nvi 75 (208) ||+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||+|||+.||+.. +||+++|||+ T Consensus 209 lH~Plt~~T~~lIn~~~l~~MK~ga~LIN~ARG~iVDe~AL~~AL~~g~I~gAalDVf~~EP~~~~~~~~s~L~~~~NVi 288 (409) T PRK11790 209 LHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI 288 (409) T ss_pred ECCCCCHHHHCCCCHHHHHHCCCCCEEEECCCCHHCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHCCCCEE T ss_conf 82679846631043999972699989998688510399999999973993089974789998987874324344499765 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHH-HHH---HHHHHHHHHHHHHHHHHCC--CCCE Q ss_conf 210201013999999999999999998603886200100013444546-653---6999999999999997258--8514 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAP-LVK---PFMTLADHLGCFIGQLISE--SIQE 149 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~-~~~---pyl~LaekLG~l~~ql~~~--~~~~ 149 (208) +||||||||.|||+++|.++|+|+++||++|.+.|+||+|.++..... ..| -+-....-||++...+.+. .+.. T Consensus 289 lTPHiGasT~EAq~~~a~~~a~~l~~~l~~G~i~nsVN~P~~~~~~~~~~~Ri~~~h~N~Pg~l~~i~~~l~~~~~NI~~ 368 (409) T PRK11790 289 LTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNFPEVSLPEHPGGHRLLHIHENRPGVLTAINQIFAEQGINIAA 368 (409) T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHH T ss_conf 63877756699999999999999999996698114402477567778887069998079875899999999876999889 Q ss_pred EEEEEECCCCC Q ss_conf 89998143011 Q 537021.9.peg.3 150 IQIIYDGSTAV 160 (208) Q Consensus 150 I~i~~~G~la~ 160 (208) ..-.-+|+++. T Consensus 369 ~~n~s~~~~aY 379 (409) T PRK11790 369 QYLQTDAEIGY 379 (409) T ss_pred HHHCCCCCEEE T ss_conf 86206776549 No 5 >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] Probab=100.00 E-value=8.6e-42 Score=281.91 Aligned_cols=118 Identities=48% Similarity=0.758 Sum_probs=113.0 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-CCHHHCCCCCHHHCC Q ss_conf 9577984570755879998389980999848502214889763221356401432375311323-320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-QNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-~~~l~~~~nvi~TPH 79 (208) +|+|+|++|+||||++.|++||+|++|||||||++|||+||++||++|+|+||+||||++||++ ++||+++|||++||| T Consensus 203 lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPH 282 (324) T COG0111 203 LHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPH 282 (324) T ss_pred ECCCCCCHHHCCCCHHHHHCCCCCCEEEECCCCCEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 83899812221379999944899819998887520358999999970983159970799999999974353998778774 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHH Q ss_conf 01013999999999999999998603886200100013444 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~ 120 (208) |||+|.|+|.+++.++++|+.+|++|+.+.| |.|.++.. T Consensus 283 iag~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~v~~~ 321 (324) T COG0111 283 IGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPEVDLE 321 (324) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCC T ss_conf 4666679999999999999999984898667--86646523 No 6 >PRK13243 glyoxylate reductase; Reviewed Probab=100.00 E-value=1.2e-41 Score=281.12 Aligned_cols=119 Identities=37% Similarity=0.566 Sum_probs=115.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|+|++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||++||.+++||+++|||++|||+ T Consensus 210 lh~Plt~eT~~li~~~~~~~MK~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~lDVf~~EP~~~~~L~~~~nvi~TPHi 289 (333) T PRK13243 210 LAVPLTKETYHMINEERLKLMKKTAILVNIARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLAPHI 289 (333) T ss_pred ECCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCEEECCCC T ss_conf 42558601346136999971799819998588400399999999980991389984799999999357659999998844 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCH Q ss_conf 101399999999999999999860388620010001344 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISF 119 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~ 119 (208) |++|.|++.+++..+++|+.+||+|+.+.|+||.+.+.. T Consensus 290 a~~T~ea~~~~~~~~~~ni~~~l~G~~p~~~VN~e~~~~ 328 (333) T PRK13243 290 GSATFEAREGMAELVAENLIAFKRGEVPPTLVNREVVKV 328 (333) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCC T ss_conf 415499999999999999999986999998619889555 No 7 >PRK08605 D-lactate dehydrogenase; Validated Probab=100.00 E-value=1.9e-40 Score=273.49 Aligned_cols=113 Identities=27% Similarity=0.446 Sum_probs=108.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC--C-C-----------C Q ss_conf 957798457075587999838998099984850221488976322135640143237531132--3-3-----------2 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA--L-Q-----------N 66 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~--~-~-----------~ 66 (208) ||+|||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||+.||| + + . T Consensus 206 lh~Plt~~T~~lI~~~~l~~MK~~a~lINtaRG~iVde~aL~~AL~~g~I~gAalDVfe~Epp~~p~~~~~~~~~~~~~~ 285 (332) T PRK08605 206 LHMPATKYNTYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGKTINDPLLE 285 (332) T ss_pred EECCCCHHHHHHCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 93368835501218999972247968999068653389999999981981289985377788878654333456777789 Q ss_pred HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 01045420021020101399999999999999999860388620010 Q 537021.9.peg.3 67 PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 (208) Q Consensus 67 ~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN 113 (208) +|+++|||++|||+|++|.||+.+++.++++|+.+||+||.++|.|| T Consensus 286 ~L~~~~NvilTPHig~~T~ea~~~m~~~a~~ni~~~l~~g~~~~~VN 332 (332) T PRK08605 286 SLINREDVILTPHIAFYTDAAVKNLIVDALDATVEVLQTGTTRLRVN 332 (332) T ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 87069999988921004899999999999999999982799646719 No 8 >PRK12480 D-lactate dehydrogenase; Provisional Probab=100.00 E-value=1.2e-39 Score=268.61 Aligned_cols=113 Identities=21% Similarity=0.365 Sum_probs=108.6 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCC-----------C---C Q ss_conf 9577984570755879998389980999848502214889763221356401432375311323-----------3---2 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPAL-----------Q---N 66 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~-----------~---~ 66 (208) ||+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||+. + . T Consensus 204 lh~Plt~~T~~lIn~~~l~~MK~~ailINtaRG~iVde~aL~~AL~~g~I~gAgLDV~e~EP~~~~~d~~~~~~~d~~~~ 283 (330) T PRK12480 204 LHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLL 283 (330) T ss_pred ECCCCCHHHHCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 73768533120048999975799976997278633199999999975984589985588899864444444455774568 Q ss_pred HHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 01045420021020101399999999999999999860388620010 Q 537021.9.peg.3 67 PLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 (208) Q Consensus 67 ~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN 113 (208) +|+++|||++|||+|++|.||+.+++..+++|+.+||++|.+.|.|| T Consensus 284 ~L~~~~NVilTPHia~~T~ea~~~m~~~a~~ni~~~l~~g~~~~~vN 330 (330) T PRK12480 284 ELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330) T ss_pred HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 87359999998846557899999999999999999983799888879 No 9 >PRK07574 formate dehydrogenase; Provisional Probab=100.00 E-value=4.3e-39 Score=265.00 Aligned_cols=112 Identities=28% Similarity=0.479 Sum_probs=108.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) ||+|||++|+||||++.|++||+|++|||||||+||||+||++||++|+|+|||+|||+.|| |.||||+.+||+++||| T Consensus 254 lh~PLt~eT~~Lin~~~l~~MK~ga~LVNtARG~iVDe~AL~~AL~sG~i~gaglDV~~~EP~p~dhPl~~lpNv~lTPH 333 (385) T PRK07574 254 IHCPLHPETEHLFDKDVLSRMKRGSYLVNTARGKIVDRDAVVEALESGHLAGYAGDVWFPQPAPADHPWRTMPRNAMTPH 333 (385) T ss_pred ECCCCCHHHHHHCCHHHHHCCCCCCEEEECCCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHCCCCCEECCC T ss_conf 86679857740102999943899818998886110199999999972980499967899889989980222996168885 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 010139999999999999999986038862001 Q 537021.9.peg.3 80 LGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 (208) Q Consensus 80 iga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v 112 (208) ++|+|.|||.|++..+.+++.+||+|++.+... T Consensus 334 iaG~t~~Aq~R~a~g~~~~l~~~~~g~p~r~~~ 366 (385) T PRK07574 334 ISGTTLSAQARYAAGTREILECFFEGRPIRDEY 366 (385) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 454869999999998999999996599999741 No 10 >PRK06487 glycerate dehydrogenase; Provisional Probab=100.00 E-value=2.4e-38 Score=260.39 Aligned_cols=112 Identities=37% Similarity=0.618 Sum_probs=107.0 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHH--CCCCCHHH Q ss_conf 957798457075587999838998099984850221488976322135640143237531132-332010--45420021 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLF--GLPNVFCA 77 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~--~~~nvi~T 77 (208) +|+|||++|+||||++.|++||++++|||+|||++|||+||++||++|+|+|||||||+.||+ .++||+ ++|||++| T Consensus 203 lh~Plt~~T~~li~~~~l~~Mk~~a~lIN~aRG~lVde~aL~~AL~~g~i~gAalDV~~~EP~~~~~pl~~~~~pNvilT 282 (317) T PRK06487 203 LHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVT 282 (317) T ss_pred EECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEEC T ss_conf 73357611211579999985389978997068654699999999984994189995899989999993453799989986 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 020101399999999999999999860388620010 Q 537021.9.peg.3 78 PYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 (208) Q Consensus 78 PHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN 113 (208) ||+|+.|.|++.+++..+++|+.+||+|+ |.|.|| T Consensus 283 PHia~~t~ea~~~~~~~~~~ni~~fl~G~-P~n~VN 317 (317) T PRK06487 283 PHSAWGSREARQRIVGQLAENARAFFAGQ-PRRVVS 317 (317) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCCC T ss_conf 85350609999999999999999998799-988889 No 11 >PRK06932 glycerate dehydrogenase; Provisional Probab=100.00 E-value=4.9e-38 Score=258.42 Aligned_cols=107 Identities=36% Similarity=0.619 Sum_probs=103.1 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHH----CCCCCH Q ss_conf 957798457075587999838998099984850221488976322135640143237531132-332010----454200 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLF----GLPNVF 75 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~----~~~nvi 75 (208) +|||||++|+||||++.|++||++++|||+|||++|||+||++||++|+|+|||||||++||+ .++||+ ++|||+ T Consensus 203 lh~Plt~eT~~li~~~~l~~MK~~a~lIN~aRG~iVde~aL~~AL~~g~I~gA~lDV~~~EP~~~~~pl~~~~~~~~Nvi 282 (314) T PRK06932 203 LHCPLTESTQNLINAETLALMKPTAFLINTGRGPLVDEQALVDALETGHIAGAALDVLVKEPPEKDNPLIQAAKTLPNLI 282 (314) T ss_pred EEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEE T ss_conf 95113010233666999735788719998267554499999999982990289972799999988984567636799899 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 21020101399999999999999999860388 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGV 107 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~ 107 (208) +|||+|++|.||+++++..+++|+.+||++|. T Consensus 283 lTPHia~~T~ea~~~~~~~~~~Ni~~fl~~gK 314 (314) T PRK06932 283 ITPHIAWASDSAVTTLVNKVMQNIEEFVQQGK 314 (314) T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 87832225799999999999999999997097 No 12 >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] Probab=100.00 E-value=8.9e-37 Score=250.53 Aligned_cols=114 Identities=43% Similarity=0.702 Sum_probs=110.5 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHHCCCC---CHH Q ss_conf 957798457075587999838998099984850221488976322135640143237531132-3320104542---002 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLFGLPN---VFC 76 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~~~~n---vi~ 76 (208) ||||||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+|||+|||+.||. .++||+.++| |++ T Consensus 206 l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvl 285 (324) T COG1052 206 LHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVL 285 (324) T ss_pred EECCCCHHHHHHCCHHHHHHCCCCEEEEECCCCCEECHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCEEE T ss_conf 97799837665329999975689769996487421659999999980974226701167888778806763668998797 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 10201013999999999999999998603886200100 Q 537021.9.peg.3 77 APYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) |||+|+.|.|++.+++..+++|+.+|++|+.+++.||. T Consensus 286 tPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~v~~ 323 (324) T COG1052 286 TPHIASATEEARKAMAELALENLEAFFDGGVPPNEVNP 323 (324) T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 04413020999999999999999999808999877788 No 13 >PRK08410 2-hydroxyacid dehydrogenase; Provisional Probab=100.00 E-value=1.5e-36 Score=249.07 Aligned_cols=106 Identities=33% Similarity=0.622 Sum_probs=101.6 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCC---CCCHH Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-233201045---42002 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGL---PNVFC 76 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~---~nvi~ 76 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+| |||||||+.|| +.++||+++ +||++ T Consensus 202 lh~Plt~~T~~li~~~~l~~Mk~~a~lIN~aRG~iVde~aL~~aL~~~~i-gaalDV~~~EP~~~~~pl~~l~~~~nvi~ 280 (311) T PRK08410 202 IHAPLNEKTKNLINYEELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YAALDVLEIEPMEKNHPLLNIKNKEKLLI 280 (311) T ss_pred EECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCC-EEEEECCCCCCCCCCCHHHHCCCCCCEEE T ss_conf 53357622234012899963045755999257422599999999975995-89998999999999984554678996899 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 1020101399999999999999999860388 Q 537021.9.peg.3 77 APYLGASTVESQEKVAIQLAHQMSDYLIDGV 107 (208) Q Consensus 77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~ 107 (208) |||+|++|.|++.+++..+++||.+|++||. T Consensus 281 TPHia~~T~ea~~~~~~~~~~ni~~fl~Ggk 311 (311) T PRK08410 281 TPHIAWASKEARKTLVEKVKENIKDFLEGGK 311 (311) T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 0843217799999999999999999982799 No 14 >PRK06436 glycerate dehydrogenase; Provisional Probab=100.00 E-value=1.4e-35 Score=242.97 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=102.3 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+|||++|+||||++.|++||+|++|||+|||++|||+||++||++|+++||++|||+.||++... .+|||++|||+ T Consensus 179 lh~Plt~~T~~lI~~~~l~~MK~~a~lIN~aRG~iVde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~--~l~NVilTPHi 256 (303) T PRK06436 179 ISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHV 256 (303) T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCC--CCCCEEECCCC T ss_conf 9257865567776899998569997899927865468999999998199659996799999899878--99988999946 Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 1-013999999999999999998603886200100 Q 537021.9.peg.3 81 G-ASTVESQEKVAIQLAHQMSDYLIDGVVSNALNM 114 (208) Q Consensus 81 g-a~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~ 114 (208) + ++|.|+++++...+++|+.+|++|+ |+|.||- T Consensus 257 Ag~~t~e~~~~~~~~a~~Ni~~fl~Gk-P~n~Vn~ 290 (303) T PRK06436 257 AGGMSGEIMQPAVALAFENIKNFFEGK-PKNIVRK 290 (303) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCC-CCEEECH T ss_conf 645799999999999999999998799-9802877 No 15 >KOG0069 consensus Probab=100.00 E-value=1.1e-33 Score=231.19 Aligned_cols=113 Identities=37% Similarity=0.655 Sum_probs=110.6 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|||||++|+|+||++.|.+||+|++|||+|||+++||+++++||+||+|++||||||++||+.++||+.++||++|||+ T Consensus 223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi 302 (336) T KOG0069 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI 302 (336) T ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCC T ss_conf 92689778887760999986479769996464240259999978753985322465467789988201023660672312 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 101399999999999999999860388620010 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN 113 (208) |+.|.++|.+++..++.++.+++.|++..+.++ T Consensus 303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336) T KOG0069 303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 557499999999999999998872688778677 No 16 >PRK00257 erythronate-4-phosphate dehydrogenase; Validated Probab=99.97 E-value=1.6e-31 Score=217.68 Aligned_cols=111 Identities=28% Similarity=0.437 Sum_probs=104.1 Q ss_pred CCCCCCHH----HHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHH Q ss_conf 95779845----70755879998389980999848502214889763221356401432375311323320104542002 Q 537021.9.peg.3 1 LHVPLTNK----TKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFC 76 (208) Q Consensus 1 lH~Plt~~----T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~ 76 (208) +|+|||++ |+||||++.|++||+|++|||+|||+||||+||+++|++|++.+|+||||++||..+.+|+++ +.+. T Consensus 173 lHvPLt~~g~~~T~~Li~~~~L~~mk~~aiLINtsRG~VVDe~ALl~aL~~g~~~~a~LDVwe~EP~i~~~Ll~~-~~ia 251 (379) T PRK00257 173 LHTPLTKEGEHPTWHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIA 251 (379) T ss_pred EECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHC-CCEE T ss_conf 925777788753204719999960799809998897300199999999981996368864356799989889845-8786 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 102010139999999999999999986038862001 Q 537021.9.peg.3 77 APYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNAL 112 (208) Q Consensus 77 TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~v 112 (208) ||||||+|.|++.|...++.+.+.+||.-....... T Consensus 252 TPHIAGyS~egK~rgT~m~~~a~c~~~~~~~~~~~~ 287 (379) T PRK00257 252 TPHIAGYSLDGKARGTAQIYQALCRFFGIEARVSLT 287 (379) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 781345678899879999999999984898543212 No 17 >pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Probab=99.96 E-value=8.4e-30 Score=206.91 Aligned_cols=81 Identities=51% Similarity=0.835 Sum_probs=78.8 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC-CCCCHHHCCCCCHHHCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113-23320104542002102 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP-ALQNPLFGLPNVFCAPY 79 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP-~~~~~l~~~~nvi~TPH 79 (208) +|+|+|++|++|||++.|++||++++|||+|||++|||+||+++|++|+++|||||||+.|| +.++||+++|||++||| T Consensus 95 ~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~l~~~~nvi~TPH 174 (176) T pfam02826 95 LHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPH 174 (176) T ss_pred ECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCCEEECCC T ss_conf 54767420246346999985189988998067551289999999980991589984699999999983770999897384 Q ss_pred CC Q ss_conf 01 Q 537021.9.peg.3 80 LG 81 (208) Q Consensus 80 ig 81 (208) ++ T Consensus 175 iA 176 (176) T pfam02826 175 IA 176 (176) T ss_pred CC T ss_conf 79 No 18 >pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Probab=99.95 E-value=1.6e-28 Score=198.85 Aligned_cols=112 Identities=33% Similarity=0.435 Sum_probs=103.6 Q ss_pred CCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCC-CCCHHHCCCCCHHHCCC Q ss_conf 57798457075587999838998099984850221488976322135640143237531132-33201045420021020 Q 537021.9.peg.3 2 HVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPA-LQNPLFGLPNVFCAPYL 80 (208) Q Consensus 2 H~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~-~~~~l~~~~nvi~TPHi 80 (208) |+|++++|+++++.+.|.+||+++++||.+||+++++++++.++.++++.+|++|||+.||+ .++||+++|||++|||+ T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~~v~~~~ll~~l~~~~~~~a~~dv~~~ep~~~~~~L~~~~nvi~TPHi 280 (313) T pfam00389 201 LAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHI 280 (313) T ss_pred ECCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCEEECCCH T ss_conf 47999865577116889845699628983378741639999998528765089997987799998747749899988946 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 101399999999999999999860388620010 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVVSNALN 113 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN 113 (208) |++|.|++.+++..+++|+.+||+|+.+.|+|| T Consensus 281 a~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~VN 313 (313) T pfam00389 281 AGATEEAQENMAEEAAENLLAFLKGGTPPNAVN 313 (313) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 564899999999999999999986999988829 No 19 >KOG0067 consensus Probab=99.36 E-value=6.7e-13 Score=101.20 Aligned_cols=109 Identities=28% Similarity=0.448 Sum_probs=96.6 Q ss_pred CCCCCCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCC Q ss_conf 95779845707558799983899809998485022148897632213564014323753113233201045420021020 Q 537021.9.peg.3 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYL 80 (208) Q Consensus 1 lH~Plt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHi 80 (208) +|+-+++.++++||.-.+++|++|++++|+|||+++||.+|.++|+.|++.+++=.- ....||.+-||.+++||- T Consensus 239 ~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa~~~-----~~~~~l~d~pn~ic~~~t 313 (435) T KOG0067 239 LHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAAPRS-----FKQGPLKDAPNLICTPHT 313 (435) T ss_pred EECCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHCCCCEECCCCCC-----CCCCCCCCCCCCCCCCCC T ss_conf 212567001343034540032146557640345567858897430368440146765-----223444578887788653 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHC Q ss_conf 1013999999999999999998603886---200100 Q 537021.9.peg.3 81 GASTVESQEKVAIQLAHQMSDYLIDGVV---SNALNM 114 (208) Q Consensus 81 ga~T~ea~~~~a~~~a~~i~~~l~~~~~---~~~vN~ 114 (208) ++.+.-+....-..++..++....|..+ +|.||- T Consensus 314 a~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk 350 (435) T KOG0067 314 AWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNK 350 (435) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 0134788899988876655512577770267777755 No 20 >PTZ00311 phosphoenolpyruvate carboxykinase; Provisional Probab=93.60 E-value=0.33 Score=28.03 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=68.8 Q ss_pred CCCCHHHHCCCCHHHHHHCCCCEEEEECC-----------CCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCC----CH Q ss_conf 77984570755879998389980999848-----------5022148897632213564014323753113233----20 Q 537021.9.peg.3 3 VPLTNKTKNILNKENLSKTKSGVCIINCA-----------RGGLVDENALAELLQSGHVAEAGFDVFEVEPALQ----NP 67 (208) Q Consensus 3 ~Plt~~T~~li~~~~l~~mk~g~~lIN~a-----------RG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~----~~ 67 (208) +|+.|..+.-+=.+.+++-+-.++|||++ |=.|-...+++.|.-+|.+..+. |...|... .. T Consensus 413 lp~~p~~Ya~lL~~ki~~~~~~~~LvNTGW~gG~yg~~G~R~~l~~TRaii~a~l~g~l~~~~---~~~~p~F~l~iP~~ 489 (543) T PTZ00311 413 LALHPTVYANMLAEKMKKHNTRVWLLNTGWIGGSYGSGGKRMPLKYTRAIIDAIHDGELDKAE---YEKFPIFNLQIPKR 489 (543) T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCC---EEECCCCCCCCCCC T ss_conf 667989999999999997399889995786678889884173059999999998569645785---16777557026676 Q ss_pred HHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 1045420021020101399999999999999999860 Q 537021.9.peg.3 68 LFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104 (208) Q Consensus 68 l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~ 104 (208) +-+.|.-++.|...+...++.+..+...|+...+=|+ T Consensus 490 ~~gVp~~iL~Pr~tW~d~~~yd~~a~~La~~F~~NF~ 526 (543) T PTZ00311 490 CEGVPSELLDPRNTWKDKEEFDKQLKELAAKFQKNFK 526 (543) T ss_pred CCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8999847669856069989999999999999999999 No 21 >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643 L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains. This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis. Probab=92.90 E-value=0.068 Score=32.34 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=60.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH-HHHHHHHHH--HCCCCCCEEEHHHHHHHCCEEEEEEEEC Q ss_conf 9999999999999972588514899981430111434789-999999886--4067861677889999559089999603 Q 537021.9.peg.3 128 FMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLN-SAVLAGIVR--VWRVGANIISAPIIIKENAIILSTIKRD 204 (208) Q Consensus 128 yl~LaekLG~l~~ql~~~~~~~I~i~~~G~la~~~t~~l~-~a~lkGlL~--~~~~~VN~VNA~~iA~erGI~v~e~~~~ 204 (208) +-.=|-|+|+++..+....+++|.+.++|.+|+.....=| .|++-|+|. +.+|++ =-|-.+|++.||.+.-...+ T Consensus 21 HTAGA~~I~~VA~S~~~~~~~~~~~~l~GSFA~TyKGHGTD~A~~GG~L~F~~~D~RI--KT~~~~A~~~G~~~~F~~~~ 98 (208) T TIGR00719 21 HTAGAAKIARVARSLVSREYERVIVSLYGSFAETYKGHGTDVALVGGLLDFDTDDDRI--KTAIELAKAKGLDIIFRVED 98 (208) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCHHH--HHHHHHHHHCCCCEEEEEEC T ss_conf 2467766866543321488567999986052321367674535772303779863157--88899998539827998502 No 22 >cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups. Probab=88.11 E-value=2.3 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=23.5 Q ss_pred HHHHCCCCHHHHHHCCCCEEEEECCCCHHC---------CHHHHHHHHCCC Q ss_conf 457075587999838998099984850221---------488976322135 Q 537021.9.peg.3 7 NKTKNILNKENLSKTKSGVCIINCARGGLV---------DENALAELLQSG 48 (208) Q Consensus 7 ~~T~~li~~~~l~~mk~g~~lIN~aRG~iv---------de~aL~~aL~~g 48 (208) +-.|.||+.++-....+|+. |.- ||.. .|..+++|++-| T Consensus 228 Dp~r~LIGDDEhgW~d~Gvf--N~E-gGCYAK~i~Ls~e~EP~I~~Ai~fg 275 (508) T cd00484 228 DPNRKLIGDDEHGWSDRGVF--NIE-GGCYAKCINLSEEKEPEIYNAIKFG 275 (508) T ss_pred CCCCCCCCCCEEEECCCCEE--CCC-CCEEEEECCCCCCCCHHHHHHHCCC T ss_conf 89874026742443588773--255-6504320468845255799875226 No 23 >PRK09344 phosphoenolpyruvate carboxykinase; Provisional Probab=87.93 E-value=2.3 Score=22.74 Aligned_cols=12 Identities=0% Similarity=0.241 Sum_probs=4.9 Q ss_pred HCCCCHHHHHHC Q ss_conf 075587999838 Q 537021.9.peg.3 10 KNILNKENLSKT 21 (208) Q Consensus 10 ~~li~~~~l~~m 21 (208) |.||+.++...- T Consensus 245 r~LIGDDehgWs 256 (525) T PRK09344 245 RKLIGDDEHGWD 256 (525) T ss_pred CCEECCCCCCCC T ss_conf 852247644316 No 24 >pfam03315 SDH_beta Serine dehydratase beta chain. L-serine dehydratase (EC:4.2.1.13) is a found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate. This enzyme is part of the gluconeogenesis pathway. Probab=81.64 E-value=2.7 Score=22.37 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=37.3 Q ss_pred HHHHHHHHHHCC---CCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCCCEEEHH Q ss_conf 999999997258---8514899981430111434789-999999886406786167788 Q 537021.9.peg.3 134 HLGCFIGQLISE---SIQEIQIIYDGSTAVMNTMVLN-SAVLAGIVRVWRVGANIISAP 188 (208) Q Consensus 134 kLG~l~~ql~~~---~~~~I~i~~~G~la~~~t~~l~-~a~lkGlL~~~~~~VN~VNA~ 188 (208) |.|....+...+ .+.+|+++.+|.++.....--| .|++.||+....+.++.-.++ T Consensus 15 rAa~~f~~~l~~~l~~~~~v~v~LyGSLa~TGkGHgTD~Av~~GL~G~~p~~~~~~~~~ 73 (148) T pfam03315 15 RAARRFRDLLRGQLPRVARVEVELYGSLALTGKGHGTDRAVILGLLGFDPDDVDIDSIE 73 (148) T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHH T ss_conf 99999999850304785399999864036528875643999841048884546833468 No 25 >cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups). Probab=75.58 E-value=6.9 Score=19.80 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=12.2 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 347899999998864067861677 Q 537021.9.peg.3 163 TMVLNSAVLAGIVRVWRVGANIIS 186 (208) Q Consensus 163 t~~l~~a~lkGlL~~~~~~VN~VN 186 (208) .-..+++++.-+|+...+.+.++. T Consensus 430 ~~~~tr~ii~ail~g~l~~~~~~~ 453 (515) T cd01919 430 GFGETRAIIDAIFNGILDKAETKL 453 (515) T ss_pred CHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 857999999999659636778288 No 26 >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. Probab=64.79 E-value=5.6 Score=20.37 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=18.5 Q ss_pred CCHHHHCCCCHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCC Q ss_conf 984570755879998389980999848502214889763221356 Q 537021.9.peg.3 5 LTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGH 49 (208) Q Consensus 5 lt~~T~~li~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~ 49 (208) +|++|-.++ ++|+.. |+-+.=|+-...--+++...+|.+.- T Consensus 45 le~kTA~L~--~tL~~~--GA~V~~~~~NplSTQDdvaAaL~~~g 85 (413) T cd00401 45 MTVQTAVLI--ETLVAL--GAEVRWSSCNIFSTQDHAAAAIAAAG 85 (413) T ss_pred CHHHHHHHH--HHHHHC--CCEEEEECCCCCCCHHHHHHHHHHCC T ss_conf 058899999--999985--99899963797653289999999679 No 27 >pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain. Probab=64.27 E-value=5.2 Score=20.57 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=24.7 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHH Q ss_conf 707558799983899809998485022-1488976 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALA 42 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~ 42 (208) .++.|+.+.|..||+|+++-|+.--.. ||-++|. T Consensus 88 ~~~vi~~eh~~~mKdgaIlaN~GHfd~EIdv~~L~ 122 (162) T pfam00670 88 NKDIITGEHMAKMKNDAIVCNIGHFDNEIDVAWLN 122 (162) T ss_pred CCCCCCHHHHHHHCCCEEEECCCCCCCEEEHHHHH T ss_conf 97747399999844886998777565227288885 No 28 >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Probab=63.27 E-value=5.8 Score=20.28 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=23.7 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHH Q ss_conf 707558799983899809998485022-14889763 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAE 43 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~ 43 (208) .++.|+.+.|.+||+|+++-|+.--.+ ||-.+|.+ T Consensus 273 ~~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~ 308 (427) T PRK05476 273 NKDVITAEHMEAMKDGAIVCNIGHFDNEIDVAALEE 308 (427) T ss_pred CCCCCCHHHHHHHCCCEEEECCCCCCCEEEHHHHHH T ss_conf 957248999985078829976777750432887752 No 29 >pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases. Probab=62.78 E-value=5.4 Score=20.44 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=13.1 Q ss_pred CHHCCHHHHHHHHCCCCCCEEEECCC Q ss_conf 02214889763221356401432375 Q 537021.9.peg.3 33 GGLVDENALAELLQSGHVAEAGFDVF 58 (208) Q Consensus 33 G~ivde~aL~~aL~~g~i~~aalDV~ 58 (208) +|++...|..-|..-|-.- ..+|++ T Consensus 28 ~Gv~G~~A~~~A~~lGa~V-~v~D~~ 52 (150) T pfam01262 28 GGVVGLGAAATAKGLGAPV-TILDVR 52 (150) T ss_pred CCHHHHHHHHHHHHCCCEE-EEEECC T ss_conf 8789999999998679989-997299 No 30 >PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional Probab=62.17 E-value=6.1 Score=20.10 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.1 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHH Q ss_conf 707558799983899809998485022-14889763 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAE 43 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~ 43 (208) .++.|..+.|.+||+|+++-|++--.+ ||-.+|.+ T Consensus 319 n~~VI~~~H~~~MKdgaIl~N~GHfd~EId~~~L~~ 354 (476) T PTZ00075 319 NDDIITLEHFPRMKDDAIVGNIGHFDTEIQVAWLKA 354 (476) T ss_pred CCCCCCHHHHHHHCCCEEEEECCCCCHHEEHHHHHH T ss_conf 977468999986537809994587841040898873 No 31 >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Probab=61.38 E-value=6.6 Score=19.90 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=28.8 Q ss_pred CHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCC Q ss_conf 879998389980999848502214889763221356401432375 Q 537021.9.peg.3 14 NKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVF 58 (208) Q Consensus 14 ~~~~l~~mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~ 58 (208) ..+++++||+|.++|-.-- .-....|.++|.+.++...++|.. T Consensus 76 ~~~E~~~lr~g~~Lis~L~--pa~~~el~~~L~~~~vtaiA~E~V 118 (510) T PRK09424 76 TDDEIALLREGATLVSFIW--PAQNPELMEKLAARGITVLAMDSV 118 (510) T ss_pred CHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHCCCCEEEEEEE T ss_conf 9899973479989999768--667989999999759928975223 No 32 >pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase. Probab=61.09 E-value=7.3 Score=19.63 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=13.1 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCC Q ss_conf 707558799983899809998485 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCAR 32 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aR 32 (208) .++.|+.+.|.+||+|+++-|++- T Consensus 275 ~~~vI~~~H~~~MKdgaIl~N~GH 298 (430) T pfam05221 275 CVDIIVGRHFMNMKKDAIVCNIGH 298 (430) T ss_pred CCCCCCHHHHHHHCCCEEEEECCC T ss_conf 887568999986417849995688 No 33 >TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process. Probab=52.46 E-value=9.8 Score=18.84 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=68.2 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHHHHCCCCCCEEEECCCCCCC------CCCCHHHC------CCCCH Q ss_conf 707558799983899809998485022-148897632213564014323753113------23320104------54200 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGGL-VDENALAELLQSGHVAEAGFDVFEVEP------ALQNPLFG------LPNVF 75 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~aL~~g~i~~aalDV~~~EP------~~~~~l~~------~~nvi 75 (208) .+++|..+.|..||+|+++-|.+-=.+ ||-.+|-+.-++.+--.--+|.|.-.- ..+-+|++ ||-.+ T Consensus 276 ~~~vI~~~h~~~MkdgAI~aN~GHFdvEI~~~~Le~~a~~~~~~r~~v~~Y~L~dGr~i~lLaeGRLVNL~~a~GHP~~v 355 (422) T TIGR00936 276 NKDVIREEHFEKMKDGAILANAGHFDVEIDVKALEELAKEKREVRPQVDEYKLKDGRRIYLLAEGRLVNLAAAEGHPSEV 355 (422) T ss_pred CCHHCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCEEEECCCCCCCHHH T ss_conf 80103648885066772885357653111658998876677754201134463889789998277332300479596046 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 2102010139999999999999999986038862001000134445466536999999999999997258851489 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQ 151 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~ 151 (208) + ..+.--|.-++..+.++ .++.-+.+-.+|.---+ .+. -+.| +.||.-..+|++.+.+=++ T Consensus 356 M-----d~SFa~QalA~~~l~~~-----~~~~e~~Vy~~P~~~D~---~vA-r~kL-~~lG~~i~~LT~~Q~~YL~ 416 (422) T TIGR00936 356 M-----DMSFANQALAAEYLLKN-----HDKLEPGVYRLPKELDE---MVA-RLKL-EALGIEIDELTEEQKKYLE 416 (422) T ss_pred H-----HHHHHHHHHHHHHHHHH-----CCCCCCCEEECHHHHHH---HHH-HHHH-HHHCCCHHHHHHHHHHHHC T ss_conf 5-----20268999999999740-----13346020553188889---999-9999-9818343364599999835 No 34 >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Probab=49.68 E-value=11 Score=18.61 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=54.3 Q ss_pred EEEEECCCCHH--CCHHHHHHHHCCCCCCEEEECCCC--------CCC-CCCCHHHCCCCCHHHC-CCCCCCHHHHHHHH Q ss_conf 09998485022--148897632213564014323753--------113-2332010454200210-20101399999999 Q 537021.9.peg.3 25 VCIINCARGGL--VDENALAELLQSGHVAEAGFDVFE--------VEP-ALQNPLFGLPNVFCAP-YLGASTVESQEKVA 92 (208) Q Consensus 25 ~~lIN~aRG~i--vde~aL~~aL~~g~i~~aalDV~~--------~EP-~~~~~l~~~~nvi~TP-Higa~T~ea~~~~a 92 (208) -+||-..-|.= ++.++-.+ .--+|-.-+-+||. +|| +.+-+++....+++|= |++++-.-+ T Consensus 32 eVlVe~gAG~gsg~~D~~Y~~--aGA~Iv~ta~~vw~~~dmvvKvKEP~~~EY~ylregqiLftyLHLA~~~~lt----- 104 (371) T COG0686 32 EVLVETGAGAGSGFDDDDYEA--AGAKIVATAAEVWAEADMVVKVKEPLPSEYPYLREGQILFTYLHLAASPELT----- 104 (371) T ss_pred EEEEECCCCCCCCCCHHHHHH--CCCEEECCHHHHHCCCCEEEEECCCCHHHHHHHCCCCEEEEEEEECCCHHHH----- T ss_conf 899965876778988278897--2887745888861102458995578802555523785899984005886899----- Q ss_pred HHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999860388620010001344454665369999999999999972 Q 537021.9.peg.3 93 IQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLI 143 (208) Q Consensus 93 ~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~ 143 (208) ..+++.+...=+--.-..+...+|-+.|.=+.+.||+...++.. T Consensus 105 -------~~l~~~gvtaIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~ 148 (371) T COG0686 105 -------EALLKSGVTAIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYY 148 (371) T ss_pred -------HHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf -------99986586147899997389987523317888666777888999 No 35 >cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily. Probab=47.94 E-value=3.7 Score=21.45 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=30.4 Q ss_pred CCCCEEEEECCCCHHCCHHHHHHHHCCCCCCEEEEC-----CCCCCCCCCCHHHCCCCCHHHCCCCC Q ss_conf 899809998485022148897632213564014323-----75311323320104542002102010 Q 537021.9.peg.3 21 TKSGVCIINCARGGLVDENALAELLQSGHVAEAGFD-----VFEVEPALQNPLFGLPNVFCAPYLGA 82 (208) Q Consensus 21 mk~g~~lIN~aRG~ivde~aL~~aL~~g~i~~aalD-----V~~~EP~~~~~l~~~~nvi~TPHiga 82 (208) -+..+++|=..-|---....+++.+..... -.-+| .+..++.. +...+++|+|||.|= T Consensus 76 ~~~~aiviGpGlg~~~~~~~~~~~~~~~~~-p~ViDAdaL~~l~~~~~~---~~~~~~~IlTPH~gE 138 (254) T cd01171 76 ERADAVVIGPGLGRDEEAAEILEKALAKDK-PLVLDADALNLLADEPSL---IKRYGPVVLTPHPGE 138 (254) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CEEECCHHHHHHHHCHHH---HCCCCCEEECCCHHH T ss_conf 358789982788999999999999984499-858863767866408354---425889787799899 No 36 >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] Probab=46.54 E-value=17 Score=17.35 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=29.0 Q ss_pred HHHCCCCHHHHHHCCCCEEEEECCCCHH-CCHHHHHHH-HCCCCCC Q ss_conf 5707558799983899809998485022-148897632-2135640 Q 537021.9.peg.3 8 KTKNILNKENLSKTKSGVCIINCARGGL-VDENALAEL-LQSGHVA 51 (208) Q Consensus 8 ~T~~li~~~~l~~mk~g~~lIN~aRG~i-vde~aL~~a-L~~g~i~ 51 (208) -.++.|..+.|..||+|+++-|...=.+ ||-.+|.+. ++...+. T Consensus 273 GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420) T COG0499 273 GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420) T ss_pred CCCCCCCHHHHHHCCCCEEEECCCCCCEEECHHHHHHHHHHHHHCC T ss_conf 8857578999972648849962656400006888887545675104 No 37 >pfam01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase. Probab=46.06 E-value=21 Score=16.78 Aligned_cols=164 Identities=18% Similarity=0.266 Sum_probs=70.6 Q ss_pred HHCCCCHHHHHHCCCCEEEEECCCCHH---------CCHHHHHHHHCCCCC-CEEEECCCCCCCCCC-----------CH Q ss_conf 707558799983899809998485022---------148897632213564-014323753113233-----------20 Q 537021.9.peg.3 9 TKNILNKENLSKTKSGVCIINCARGGL---------VDENALAELLQSGHV-AEAGFDVFEVEPALQ-----------NP 67 (208) Q Consensus 9 T~~li~~~~l~~mk~g~~lIN~aRG~i---------vde~aL~~aL~~g~i-~~aalDV~~~EP~~~-----------~~ 67 (208) .|.||++++...-.+|+ .|.- ||. -.|..+++|++-|-+ --..+|--..+|-.+ -| T Consensus 231 ~R~LIGDDEhgW~~~Gv--fnfE-GGCYAK~i~Ls~e~EP~I~~Ai~~gavlENV~~d~~~~~~df~d~s~TeNtR~~yP 307 (451) T pfam01293 231 NRRLIGDDEHGWSDNGV--FNFE-GGCYAKTINLSEEKEPEIYNAIRFGAVLENVVVDPETREVDFDDTSLTENTRVAYP 307 (451) T ss_pred CCEEECCCEEEECCCCE--EEEC-CCEEEEECCCCCCCCCHHHHHHCCCCEEHEEEECCCCCCCCCCCCCCCCCCEEEEE T ss_conf 86066276500268886--9945-86463104788334732998733131000057746888677778876663218968 Q ss_pred HHCCCCCHHH-----C-CCCCCCHHHH---HHHHHHHHHHHHHHHCCCCCCCH------HHCCCCCHHHHHHHHHHHHHH Q ss_conf 1045420021-----0-2010139999---99999999999998603886200------100013444546653699999 Q 537021.9.peg.3 68 LFGLPNVFCA-----P-YLGASTVESQ---EKVAIQLAHQMSDYLIDGVVSNA------LNMAIISFEEAPLVKPFMTLA 132 (208) Q Consensus 68 l~~~~nvi~T-----P-Higa~T~ea~---~~~a~~~a~~i~~~l~~~~~~~~------vN~p~~~~~~~~~~~pyl~La 132 (208) +-..+|...+ | +|=..|..|. --+++...+|..-+|--|...-. |.-|.-.. ....-.||+.+- T Consensus 308 ~~~i~n~~~~~~~~~P~~IifLt~DafGVlPPvskLt~eQA~y~FlsGyTak~agtE~Gv~ep~~tf-s~cfg~pF~~~~ 386 (451) T pfam01293 308 IEHIPNAVEPGVGGHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTERGVTEPEATF-SACFGAPFLPLH 386 (451) T ss_pred HHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCC T ss_conf 7775576675547898779999526667767233179999999987051002355556766778514-246687653688 Q ss_pred -HHHHHHHHHHHCCCCCEEEEEEECCCC------CCCCHHHHHHHHHHHHH Q ss_conf -999999999725885148999814301------11434789999999886 Q 537021.9.peg.3 133 -DHLGCFIGQLISESIQEIQIIYDGSTA------VMNTMVLNSAVLAGIVR 176 (208) Q Consensus 133 -ekLG~l~~ql~~~~~~~I~i~~~G~la------~~~t~~l~~a~lkGlL~ 176 (208) ..-+.++.+.....--++=+...|=.. +.-....|++.+..+|+ T Consensus 387 p~~ya~lL~~~i~~~~~~~~LvNTGw~Gg~yg~G~R~~l~~Tr~~i~ail~ 437 (451) T pfam01293 387 PTVYAELLGEKIKEHGVNVYLVNTGWTGGPYGVGKRMPIKYTRAIIDAILD 437 (451) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHC T ss_conf 899999999999973997899947755778887546267999999999966 No 38 >TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process. Probab=41.83 E-value=20 Score=16.91 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=30.6 Q ss_pred CCCHHHHHHCCCCEEEEECCCCHHCCHHH-HHHHHCCCCC Q ss_conf 55879998389980999848502214889-7632213564 Q 537021.9.peg.3 12 ILNKENLSKTKSGVCIINCARGGLVDENA-LAELLQSGHV 50 (208) Q Consensus 12 li~~~~l~~mk~g~~lIN~aRG~ivde~a-L~~aL~~g~i 50 (208) |++.+.++.+|+++-++|+|-=.+=+..+ +.++...||+ T Consensus 34 LV~~~~L~~~r~~Ae~~~sA~m~L~ei~~~m~~a~~~GK~ 73 (252) T TIGR01465 34 LVPPELLAHCRPGAEVVNSAAMSLEEIVDIMVDAVREGKL 73 (252) T ss_pred CCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCE T ss_conf 7817899727898888605026988999999999866984 No 39 >pfam09692 Arb1 Argonaute siRNA chaperone (ARC) complex subunit Arb1. Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast. Probab=41.81 E-value=28 Score=15.98 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=44.4 Q ss_pred CHHCCHHHHHHHHCCCCCCEEEECCCC-CCC-CCCCHHHCCCCCHHH---CCCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 022148897632213564014323753-113-233201045420021---02010139999999999999999986038 Q 537021.9.peg.3 33 GGLVDENALAELLQSGHVAEAGFDVFE-VEP-ALQNPLFGLPNVFCA---PYLGASTVESQEKVAIQLAHQMSDYLIDG 106 (208) Q Consensus 33 G~ivde~aL~~aL~~g~i~~aalDV~~-~EP-~~~~~l~~~~nvi~T---PHiga~T~ea~~~~a~~~a~~i~~~l~~~ 106 (208) |+ +|+.+|.+.=++......|-|+-. .++ .++-.+-..-.-.+| ||+++ ..|.+..++.++..|-..|+.-- T Consensus 82 Gg-~~~~dL~~~d~eei~~a~a~~~I~p~d~~~w~VDF~~Va~GFLS~~~p~~~~-~~~~~v~la~~tirNFL~Yvl~H 158 (392) T pfam09692 82 GG-LDQRDLADLDSEEILAARATDSIQPDDPEHWDVDFEGVAKGFLSSHLPYYGL-EGEDMVKLACDTIRNFLNYVLYH 158 (392) T ss_pred CC-CCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHC T ss_conf 88-9878887479989987541363276665566453688757764121011267-43899998899999999999861 No 40 >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] Probab=35.83 E-value=24 Score=16.35 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=14.6 Q ss_pred HHHHHHHHHHCCCCCCCHHHCCCCCH Q ss_conf 99999999860388620010001344 Q 537021.9.peg.3 94 QLAHQMSDYLIDGVVSNALNMAIISF 119 (208) Q Consensus 94 ~~a~~i~~~l~~~~~~~~vN~p~~~~ 119 (208) ..+.-++..|.+..+++.+-...+++ T Consensus 103 ~La~~~La~fag~~Vpr~vraqlhdp 128 (356) T COG3288 103 ALAIFVLAAFAGEAVPRIVRAQLHDP 128 (356) T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCH T ss_conf 99999999987764000354333337 No 41 >TIGR01616 nitro_assoc nitrogenase-associated protein; InterPro: IPR006503 This set of sequences describe a small family of uncharacterised proteins only found so far in alpha and gamma proteobacteria and in the Cyanobacterium Nostoc sp. PCC 7120. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. . Probab=33.70 E-value=16 Score=17.47 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=33.6 Q ss_pred HHHHHHHHCCCCCCCHHH--CCCCCHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 999999860388620010--001344454665369-9999999999999 Q 537021.9.peg.3 96 AHQMSDYLIDGVVSNALN--MAIISFEEAPLVKPF-MTLADHLGCFIGQ 141 (208) Q Consensus 96 a~~i~~~l~~~~~~~~vN--~p~~~~~~~~~~~py-l~LaekLG~l~~q 141 (208) |+.++.||..+++....| +|.+ ..-+++|| ++=++.|..|+.. T Consensus 40 A~~LRpyFg~kPV~~WfNraAPrv---KsGEV~p~s~de~sALalMvsD 85 (131) T TIGR01616 40 ADTLRPYFGDKPVKEWFNRAAPRV---KSGEVRPDSLDEASALALMVSD 85 (131) T ss_pred HHHCCHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHCC T ss_conf 122152231588201146567851---2245661003858899986303 No 42 >COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Probab=30.62 E-value=42 Score=14.86 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=37.3 Q ss_pred HHCCCC-EEEEECCCCHHCCHHHHHHHHCC--CCCCEEEECCCCCCCCCC--------------CHHHCCCCCHHHCCCC Q ss_conf 838998-09998485022148897632213--564014323753113233--------------2010454200210201 Q 537021.9.peg.3 19 SKTKSG-VCIINCARGGLVDENALAELLQS--GHVAEAGFDVFEVEPALQ--------------NPLFGLPNVFCAPYLG 81 (208) Q Consensus 19 ~~mk~g-~~lIN~aRG~ivde~aL~~aL~~--g~i~~aalDV~~~EP~~~--------------~~l~~~~nvi~TPHig 81 (208) +.||.. .++|-.| || +|-..|..+..+ |+-.-|..=+++.-|.+. |.+.+.+ .+.||.. T Consensus 12 ~~ik~~~kv~vAfS-GG-vDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~--~~~~~~~ 87 (269) T COG1606 12 KAIKEKKKVVVAFS-GG-VDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMN--RMDPEFK 87 (269) T ss_pred HHHHHCCEEEEEEC-CC-CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEHH--HCCHHHC T ss_conf 99864373999965-88-42799999999973564699997168777666067899999948762465500--0252330 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 01399999999999999999860 Q 537021.9.peg.3 82 ASTVESQEKVAIQLAHQMSDYLI 104 (208) Q Consensus 82 a~T~ea~~~~a~~~a~~i~~~l~ 104 (208) +++.+-=.-|-..+-+-+...-. T Consensus 88 ~n~~~rCY~CK~~v~~~l~~~a~ 110 (269) T COG1606 88 ENPENRCYLCKRAVYSTLVEEAE 110 (269) T ss_pred CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 49987355778999999999999 No 43 >pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Probab=30.32 E-value=43 Score=14.83 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.9 Q ss_pred HHHCCCCCHHHH Q ss_conf 010001344454 Q 537021.9.peg.3 111 ALNMAIISFEEA 122 (208) Q Consensus 111 ~vN~p~~~~~~~ 122 (208) .|+...++++.. T Consensus 91 iid~sT~~p~~~ 102 (163) T pfam03446 91 IIDGSTISPDDT 102 (163) T ss_pred EEECCCCCHHHH T ss_conf 986798999999 No 44 >KOG0046 consensus Probab=27.85 E-value=47 Score=14.60 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=28.2 Q ss_pred CCCCHHHHCCCCHHHHHHCCCCEE---EEECCCCHHCCHHHHH Q ss_conf 779845707558799983899809---9984850221488976 Q 537021.9.peg.3 3 VPLTNKTKNILNKENLSKTKSGVC---IINCARGGLVDENALA 42 (208) Q Consensus 3 ~Plt~~T~~li~~~~l~~mk~g~~---lIN~aRG~ivde~aL~ 42 (208) +|.+|+|. +.|..+|+|.+ +||.|--+.|||.|+- T Consensus 142 lPinp~t~-----~lf~~vkDGvlLcKlIN~svPdTIDERaiN 179 (627) T KOG0046 142 LPINPNTN-----DLFDLVKDGVLLCKLINLSVPDTIDERAIN 179 (627) T ss_pred CCCCCCHH-----HHHHHHCCCEEEEHHHCCCCCCCHHHHHHC T ss_conf 88898667-----999986564542113245689852256634 No 45 >TIGR01123 ilvE_II branched-chain amino acid aminotransferase; InterPro: IPR005786 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process. Probab=27.25 E-value=36 Score=15.32 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=68.5 Q ss_pred CHHHCCCCCHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCCCCHH--------------HHH-HHHHH Q ss_conf 201045420021-02010139999999999999999986038-86200100013444--------------546-65369 Q 537021.9.peg.3 66 NPLFGLPNVFCA-PYLGASTVESQEKVAIQLAHQMSDYLIDG-VVSNALNMAIISFE--------------EAP-LVKPF 128 (208) Q Consensus 66 ~~l~~~~nvi~T-PHiga~T~ea~~~~a~~~a~~i~~~l~~~-~~~~~vN~p~~~~~--------------~~~-~~~py 128 (208) ..|.=.|-+|.| |-||=-+-.+.+-.-..+|-=+-+||++| ..+.+-+.=+.+-. .+. .+. + T Consensus 92 asLYLRPF~Igt~~~lGV~~a~se~~~f~~~~sPvG~YFk~Gq~~pgv~~~v~t~y~RAap~GtG~vK~GGNYAASLl-~ 170 (329) T TIGR01123 92 ASLYLRPFVIGTEPNLGVKAAPSEEYLFYVFASPVGAYFKGGQLAPGVSIFVETEYVRAAPGGTGAVKVGGNYAASLL-A 170 (329) T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECCCCEEEEECCHHHCCCCCCCEEECCHHHHHHHH-H T ss_conf 651005656876576675378621035667660365300477016674378601111026889640441044788898-9 Q ss_pred HHHHHHHH---H-HHHHHHC-----------CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH Q ss_conf 99999999---9-9999725-----------8851489998143011143478999999988640678616778899995 Q 537021.9.peg.3 129 MTLADHLG---C-FIGQLIS-----------ESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRVGANIISAPIIIKE 193 (208) Q Consensus 129 l~LaekLG---~-l~~ql~~-----------~~~~~I~i~~~G~la~~~t~~l~~a~lkGlL~~~~~~VN~VNA~~iA~e 193 (208) ...+...| + +..++.= +..+-+-|.-.|.-+..-+.+++-++|.|+-+. ....|||+ T Consensus 171 ~~~A~~~G~p~R~~~~~~~LDp~~~~~iEE~Ga~N~F~i~~DGgsa~~~t~~~S~SiL~giTR~--------S~L~lA~~ 242 (329) T TIGR01123 171 QKKAAEQGGPERDYDQVIYLDPVEHKYIEEVGAMNFFLITGDGGSAELVTPPLSGSILPGITRD--------SLLQLAKD 242 (329) T ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCHHHH--------HHHHHHHH T ss_conf 9999863887766146777778998378863564378782479711445257784415424289--------99999997 Q ss_pred -CCEEEEEEEE Q ss_conf -5908999960 Q 537021.9.peg.3 194 -NAIILSTIKR 203 (208) Q Consensus 194 -rGI~v~e~~~ 203 (208) .|+.|+|.+- T Consensus 243 ~~G~~V~Er~i 253 (329) T TIGR01123 243 RLGLEVEERRI 253 (329) T ss_pred HCCCEEEECEE T ss_conf 08964740400 No 46 >PRK13937 phosphoheptose isomerase; Provisional Probab=26.83 E-value=31 Score=15.70 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=21.9 Q ss_pred CCCCCCEEEHHHHHHHCCEEEEEEEECCCC Q ss_conf 067861677889999559089999603568 Q 537021.9.peg.3 178 WRVGANIISAPIIIKENAIILSTIKRDKSG 207 (208) Q Consensus 178 ~~~~VN~VNA~~iA~erGI~v~e~~~~~sG 207 (208) .+..-|.++|-..|+++|+++--.+-.+.| T Consensus 120 SGnS~Nii~A~~~A~~~g~~~i~ltG~~gg 149 (192) T PRK13937 120 SGNSPNVLAALEKARELGMTTIGLTGRDGG 149 (192) T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 999979999999999879979999888960 No 47 >cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. Probab=26.39 E-value=48 Score=14.51 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=65.0 Q ss_pred EEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCC---C------CCCHHHCCCC-------CHHHCCCCCCCHHHHH Q ss_conf 9998485022148897632213564014323753113---2------3320104542-------0021020101399999 Q 537021.9.peg.3 26 CIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEP---A------LQNPLFGLPN-------VFCAPYLGASTVESQE 89 (208) Q Consensus 26 ~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP---~------~~~~l~~~~n-------vi~TPHiga~T~ea~~ 89 (208) +++-.+.+..-.|...++.+-+.++-|..+.-...+. . ..-|+.-.++ ....+.+|..-.+ T Consensus 32 l~~~~~~~d~~~q~~~i~~li~~~vDgIii~p~~~~~~~~~l~~a~~agIPvV~~d~~~~~~~~~~~~~~v~~Dn~~--- 108 (273) T cd06309 32 LKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVDVKDDSLYVTFIGSDFVE--- 108 (273) T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCHHH--- T ss_conf 99976999999999999999975999999805765435899999997499889982677678875147785277799--- Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCHHHHH Q ss_conf 99999999999986038862001000134445466536999999999999997258-85148999814301114347899 Q 537021.9.peg.3 90 KVAIQLAHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISE-SIQEIQIIYDGSTAVMNTMVLNS 168 (208) Q Consensus 90 ~~a~~~a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~-~~~~I~i~~~G~la~~~t~~l~~ 168 (208) .+..+++.+.+.+.++.-.-.+..+.-.... -+|..-|...+... .++-+. ...|+.. ..-.. T Consensus 109 -~G~~aa~~l~~~~~~~~~i~~i~g~~~~~~~----------~~R~~Gf~~~l~~~~~~~iv~-~~~~~~~----~~~~~ 172 (273) T cd06309 109 -EGRRAADWLAKATGGKGNIVELQGTVGSSVA----------IDRKKGFAEVIKKYPNMKIVA-SQTGDFT----RAKGK 172 (273) T ss_pred -HHHHHHHHHHHHCCCCCEEEEEECCCCCHHH----------HHHHHHHHHHHHHCCCCEEEE-EECCCCC----HHHHH T ss_conf -9999999989844898079998289898599----------999999999998789986765-4123468----89999 Q ss_pred HHHHHHHHHCCCCCCEE---E------HHHHHHHCCEE Q ss_conf 99999886406786167---7------88999955908 Q 537021.9.peg.3 169 AVLAGIVRVWRVGANII---S------APIIIKENAII 197 (208) Q Consensus 169 a~lkGlL~~~~~~VN~V---N------A~~iA~erGI~ 197 (208) ..++.+|.....+++.| | |-.-+++.|++ T Consensus 173 ~~~~~~L~~~p~~i~ai~~~nd~~a~Ga~~al~~~G~~ 210 (273) T cd06309 173 EVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKK 210 (273) T ss_pred HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCC T ss_conf 99999997278888889867857999999999983999 No 48 >COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only] Probab=25.98 E-value=41 Score=14.93 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 999999999998603886 Q 537021.9.peg.3 91 VAIQLAHQMSDYLIDGVV 108 (208) Q Consensus 91 ~a~~~a~~i~~~l~~~~~ 108 (208) -|..+|.+|...++++.- T Consensus 144 ~Ay~~a~aVe~elr~g~~ 161 (183) T COG2306 144 KAYRTANAVEAELRNGKF 161 (183) T ss_pred HHHHHHHHHHHHHHCCCC T ss_conf 999999999999864876 No 49 >PRK00414 gmhA phosphoheptose isomerase; Reviewed Probab=23.84 E-value=37 Score=15.26 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=20.0 Q ss_pred CCCCCEEEHHHHHHHCCEEEEEEEECCCC Q ss_conf 67861677889999559089999603568 Q 537021.9.peg.3 179 RVGANIISAPIIIKENAIILSTIKRDKSG 207 (208) Q Consensus 179 ~~~VN~VNA~~iA~erGI~v~e~~~~~sG 207 (208) +..-|.++|-..|+++|+.+---+-.+.| T Consensus 122 GnS~Nii~A~~~Ak~~g~~~i~ltG~~GG 150 (192) T PRK00414 122 GNSGNIIKAIEAAREKGMKVITLTGKDGG 150 (192) T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 99999999999999889989999779961 No 50 >PRK13936 phosphoheptose isomerase; Provisional Probab=23.77 E-value=34 Score=15.49 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=22.9 Q ss_pred HCCCCCCEEEHHHHHHHCCEEEEEEEECCCC Q ss_conf 4067861677889999559089999603568 Q 537021.9.peg.3 177 VWRVGANIISAPIIIKENAIILSTIKRDKSG 207 (208) Q Consensus 177 ~~~~~VN~VNA~~iA~erGI~v~e~~~~~sG 207 (208) ..+...|.++|-..|++||+.+---+-.+.| T Consensus 120 ~SGnS~Nii~A~~~A~~~g~~~i~ltG~dgg 150 (197) T PRK13936 120 TSGNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197) T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 9999989999999999859959999816853 No 51 >TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.. Probab=23.20 E-value=48 Score=14.51 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=54.7 Q ss_pred EEEEECCCCHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHH---------CCCCCCCHHHHHHHHHHH Q ss_conf 09998485022148897632213564014323753113233201045420021---------020101399999999999 Q 537021.9.peg.3 25 VCIINCARGGLVDENALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCA---------PYLGASTVESQEKVAIQL 95 (208) Q Consensus 25 ~~lIN~aRG~ivde~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~T---------PHiga~T~ea~~~~a~~~ 95 (208) |.|+.-+.- ..-||+.+|++|+=--+-..|++. ++++-++..||+-+| |=+-..|.--.++=-.+. T Consensus 4 AvLySGGKD---S~~ALy~al~eG~eV~~LV~v~se--N~eSyMfH~pN~Hl~~l~AEavGiPL~klyt~GeeEkEVedL 78 (227) T TIGR00289 4 AVLYSGGKD---SILALYKALEEGFEVKYLVGVISE--NEESYMFHVPNVHLTDLVAEAVGIPLIKLYTSGEEEKEVEDL 78 (227) T ss_pred EEEECCCHH---HHHHHHHHHHCCCCEEEEEEEECC--CCCCCEEECHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHH T ss_conf 898518713---689999998628854785100028--898620534257899999976176625630278652117666 Q ss_pred HHHHHHHH---CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999986---038862001000134445466536999999999 Q 537021.9.peg.3 96 AHQMSDYL---IDGVVSNALNMAIISFEEAPLVKPFMTLADHLG 136 (208) Q Consensus 96 a~~i~~~l---~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG 136 (208) +.++...= -.+.+..+|. ..+..-| +=..+++|| T Consensus 79 ag~l~~lderGvea~~~Ga~~------S~YQK~R-id~vCrelG 115 (227) T TIGR00289 79 AGQLEELDERGVEAVVIGAIE------SEYQKSR-IDKVCRELG 115 (227) T ss_pred HHHHHHHHHCCCCEEEECCEE------CCHHHHH-HHHHHHHHC T ss_conf 215544553054547885341------0112335-778877714 No 52 >COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] Probab=23.07 E-value=58 Score=14.01 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.4 Q ss_pred CCCCHHHHHHCCCCEEEEECCCCHHCCHHH-HHHHHCCCC Q ss_conf 755879998389980999848502214889-763221356 Q 537021.9.peg.3 11 NILNKENLSKTKSGVCIINCARGGLVDENA-LAELLQSGH 49 (208) Q Consensus 11 ~li~~~~l~~mk~g~~lIN~aRG~ivde~a-L~~aL~~g~ 49 (208) -++|.+.|+.+++++-++|++-=.+-.-.+ +.++.++|+ T Consensus 37 SLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk 76 (254) T COG2875 37 SLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGK 76 (254) T ss_pred CCCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 7689999964589988982476889999999999997588 No 53 >TIGR01077 L13_A_E ribosomal protein L13; InterPro: IPR005755 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L13 is one of the proteins from the large ribosomal subunit . In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit. Probab=22.86 E-value=42 Score=14.86 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHCCCCCCEEEHHH Q ss_conf 899999998864067861677889 Q 537021.9.peg.3 166 LNSAVLAGIVRVWRVGANIISAPI 189 (208) Q Consensus 166 l~~a~lkGlL~~~~~~VN~VNA~~ 189 (208) |.+-+-|-||. ++.|+.|||+. T Consensus 13 LAS~VAK~lL~--G~~vVvVnAE~ 34 (144) T TIGR01077 13 LASVVAKRLLN--GERVVVVNAEK 34 (144) T ss_pred HHHHHHHHHHC--CCEEEEEECCE T ss_conf 89999998757--98678972260 No 54 >TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; InterPro: IPR003526 This entry represents MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The ygbB protein is a putative enzyme of this type .; GO: 0008685 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process. Probab=22.83 E-value=58 Score=13.98 Aligned_cols=87 Identities=14% Similarity=0.233 Sum_probs=52.2 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCC Q ss_conf 89763221356401432375311323320104542002102010139999999999999999986038862001000134 Q 537021.9.peg.3 39 NALAELLQSGHVAEAGFDVFEVEPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIIS 118 (208) Q Consensus 39 ~aL~~aL~~g~i~~aalDV~~~EP~~~~~l~~~~nvi~TPHiga~T~ea~~~~a~~~a~~i~~~l~~~~~~~~vN~p~~~ 118 (208) +||+-|+-.|.|+ ..| |+.|..|-..+-..+ .+++...++.+- ...+|+-.+= T Consensus 49 DAlLGA~glGDIG----~~F---Pdtd~~wKgaDS~~l-------------------L~~~~~~~~~~g-y~~~N~D~ti 101 (159) T TIGR00151 49 DALLGALGLGDIG----KHF---PDTDPRWKGADSRVL-------------------LRKAVELVKEKG-YRIGNVDVTI 101 (159) T ss_pred HHHHHHHHHCCCC----CCC---CCCCHHHCCCCHHHH-------------------HHHHHHHHHHCC-CCEEEEEEEE T ss_conf 8888775200022----437---862334568877899-------------------999999998558-8045689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 4454665369999999999999972588514899981 Q 537021.9.peg.3 119 FEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYD 155 (208) Q Consensus 119 ~~~~~~~~pyl~LaekLG~l~~ql~~~~~~~I~i~~~ 155 (208) ..+.|.+.||+ +.|=...+.++.-++..|+|... T Consensus 102 ia~~PKl~P~i---~~mR~~iA~~L~i~~d~vnvKAT 135 (159) T TIGR00151 102 IAQRPKLAPHI---EAMRENIAELLGIPLDQVNVKAT 135 (159) T ss_pred EECCCCCCCCH---HHHHHHHHHHHCCCCCCEEEEEE T ss_conf 73189862226---89999998884687021132587 No 55 >cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh). Probab=22.08 E-value=38 Score=15.17 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=20.3 Q ss_pred CCCCCEEEHHHHHHHCCEEEEEEEECCC Q ss_conf 6786167788999955908999960356 Q 537021.9.peg.3 179 RVGANIISAPIIIKENAIILSTIKRDKS 206 (208) Q Consensus 179 ~~~VN~VNA~~iA~erGI~v~e~~~~~s 206 (208) +..-|.++|-..|+++|+++--.+..+. T Consensus 112 G~s~nii~a~~~ak~~g~~~i~ltg~~g 139 (177) T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDG 139 (177) T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9998999999999987998999987898 No 56 >TIGR00625 tfb2 Transcription factor tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0003702 RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0005634 nucleus. Probab=21.48 E-value=61 Score=13.87 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=36.6 Q ss_pred CCCCCHHHCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCC-------------------HHHCCCCCHHHHHHHHHH Q ss_conf 4542002102010139999999--9999999999860388620-------------------010001344454665369 Q 537021.9.peg.3 70 GLPNVFCAPYLGASTVESQEKV--AIQLAHQMSDYLIDGVVSN-------------------ALNMAIISFEEAPLVKPF 128 (208) Q Consensus 70 ~~~nvi~TPHiga~T~ea~~~~--a~~~a~~i~~~l~~~~~~~-------------------~vN~p~~~~~~~~~~~py 128 (208) .++|.++ |--|+|+-.|+ .=.+|+||+.||++..-|- --|+|-++|.....|+=| T Consensus 366 RF~NmVv----g~iTReSirrAl~nGItA~QII~yL~ThAHP~MrrlaeekleKkleldPnCk~~~pvLPPT~vDQIrLW 441 (507) T TIGR00625 366 RFSNMVV----GQITRESIRRALANGITAEQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEQVPVLPPTVVDQIRLW 441 (507) T ss_pred CCCCEEE----EEECHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 2554278----865467899987416548889997424787777887787654210358876788887988234566786 No 57 >TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process. Probab=21.42 E-value=62 Score=13.80 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=47.8 Q ss_pred HHCCCCCCCHHHHHHHHHHH------HHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC Q ss_conf 21020101399999999999------999999860388620010001344454665369999999999999972588-51 Q 537021.9.peg.3 76 CAPYLGASTVESQEKVAIQL------AHQMSDYLIDGVVSNALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISES-IQ 148 (208) Q Consensus 76 ~TPHiga~T~ea~~~~a~~~------a~~i~~~l~~~~~~~~vN~p~~~~~~~~~~~pyl~LaekLG~l~~ql~~~~-~~ 148 (208) ++|-.++....-.|--+..+ |.+|-.||+.-+-..+||.|.++. .||-+|++|.. ... .. T Consensus 284 ~sPFnAFLllQGLETLsLR~ERH~~NA~kVA~fL~~Hp~V~wV~YPGL~s------~~~h~lAkkYl-------~~G~~G 350 (434) T TIGR01326 284 LSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS------HPHHALAKKYL-------PKGLFG 350 (434) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC------CHHHHHHHHHH-------CCCCEE T ss_conf 01789999998666787678888899999999972788445134888788------75378899874-------179426 Q ss_pred EE-EEEEECCC Q ss_conf 48-99981430 Q 537021.9.peg.3 149 EI-QIIYDGST 158 (208) Q Consensus 149 ~I-~i~~~G~l 158 (208) .| ..+..|-. T Consensus 351 ~vLsFe~kGG~ 361 (434) T TIGR01326 351 AVLSFEIKGGR 361 (434) T ss_pred EEEECCCCCCH T ss_conf 78741321828 No 58 >PRK10886 DnaA initiator-associating protein DiaA; Provisional Probab=21.39 E-value=42 Score=14.89 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=21.9 Q ss_pred CCCCCCEEEHHHHHHHCCEEEEEEEECCCC Q ss_conf 067861677889999559089999603568 Q 537021.9.peg.3 178 WRVGANIISAPIIIKENAIILSTIKRDKSG 207 (208) Q Consensus 178 ~~~~VN~VNA~~iA~erGI~v~e~~~~~sG 207 (208) .+..-|.++|-..|++||+.+---+-.+.| T Consensus 119 SGnS~Nii~Ai~~A~~~g~~~i~ltG~~gg 148 (196) T PRK10886 119 RGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196) T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 999989999999999889989999768862 No 59 >pfam08745 UPF0278 UPF0278 family. Members of this family are uncharacterized proteins about 200 amino acids in length. Probab=20.41 E-value=65 Score=13.67 Aligned_cols=59 Identities=8% Similarity=0.014 Sum_probs=37.2 Q ss_pred CCCHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 134445466536999----99999999999725885148999814301114347899999998 Q 537021.9.peg.3 116 IISFEEAPLVKPFMT----LADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGI 174 (208) Q Consensus 116 ~~~~~~~~~~~pyl~----LaekLG~l~~ql~~~~~~~I~i~~~G~la~~~t~~l~~a~lkGl 174 (208) .+++..+.+++.|++ ..+.+.+|-.-+....|..-++..-+.+-.....-+...+-||+ T Consensus 46 YmPpsVy~El~~f~~~~~~~~e~~~~l~twv~~KsP~ry~i~IPa~i~ye~I~e~R~RIdkGL 108 (206) T pfam08745 46 YIPPSVYKELTGFLDRNGCPEELLAKLDTWVVKKSPNRYELKIPAEIFYEYIEDVRERIDKGL 108 (206) T ss_pred EECHHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 838789999999998559988899765148896489720054539999999999999987336 No 60 >KOG1370 consensus Probab=20.23 E-value=66 Score=13.66 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=18.4 Q ss_pred HHHCCCCHHHHHHCCCCEEEEECCCC Q ss_conf 57075587999838998099984850 Q 537021.9.peg.3 8 KTKNILNKENLSKTKSGVCIINCARG 33 (208) Q Consensus 8 ~T~~li~~~~l~~mk~g~~lIN~aRG 33 (208) -.+++|..+.|.+||+++++-|.+.- T Consensus 278 Gc~dii~~~H~~~mk~d~IvCN~Ghf 303 (434) T KOG1370 278 GCKDIITGEHFDQMKNDAIVCNIGHF 303 (434) T ss_pred CCCCHHHHHHHHHCCCCCEEECCCCC T ss_conf 87312339999747677378525654 Done!