BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.34_1
(208 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.34_1
Length = 208
Score = 422 bits (1086), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV
Sbjct: 1 LHVPLTNKTKNILNKENLSKTKSGVCIINCARGGLVDENALAELLQSGHVAEAGFDVFEV 60
Query: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120
EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE
Sbjct: 61 EPALQNPLFGLPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLIDGVVSNALNMAIISFE 120
Query: 121 EAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRV 180
EAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRV
Sbjct: 121 EAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRVWRV 180
Query: 181 GANIISAPIIIKENAIILSTIKRDKSGV 208
GANIISAPIIIKENAIILSTIKRDKSGV
Sbjct: 181 GANIISAPIIIKENAIILSTIKRDKSGV 208
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 24.6 bits (52), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 46 QSGHVAEAGFDVFE 59
QSGH+ E GF++++
Sbjct: 988 QSGHIREIGFELYQ 1001
>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 495
Score = 22.7 bits (47), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 119 FEEAPLVKPFMTLADHLGCFIGQ-LISESIQEIQIIYDGSTAVMNTMVLNSAVLAGIVRV 177
F +P++ F+ L ++G + Q I I + + + V+NS + G V V
Sbjct: 46 FRVSPILPLFVLLVANIGTWFTQNPIFPMWSLITLAVYAANLSLGKKVMNSDIKIGEVYV 105
Query: 178 WRV 180
WR+
Sbjct: 106 WRI 108
>gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 273
Score = 22.7 bits (47), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 136 GCFIGQLISESIQEIQII 153
GC+IGQ + IQ II
Sbjct: 183 GCYIGQEVVSRIQHRNII 200
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 22.7 bits (47), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 111 ALNMAIISFEEAPLVKPFMTLADHLGCFIGQLISESIQEIQIIYD 155
AL+ +I+ A P LA GC +G+ ++ I YD
Sbjct: 225 ALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYD 269
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 22.3 bits (46), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 137 CFIGQLISESIQEIQII 153
CFIG+ ++ SI EIQ I
Sbjct: 176 CFIGESLAASIIEIQKI 192
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 22.3 bits (46), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 71 LPNVFCAPYLGASTVESQEKVAIQLAHQMSDYLI 104
L N + ST + EK + L+H SD+++
Sbjct: 230 LTNGLAIATIADSTFHNDEKTSPNLSHNSSDHIL 263
>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 483
Score = 21.6 bits (44), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 85 VESQEKVAIQLAHQMSDYLIDGVVS 109
VE ++ AIQ Q+S YL GV+S
Sbjct: 231 VEQRDIPAIQGTSQLSPYLSIGVLS 255
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,804
Number of Sequences: 1233
Number of extensions: 4312
Number of successful extensions: 19
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 208
length of database: 328,796
effective HSP length: 70
effective length of query: 138
effective length of database: 242,486
effective search space: 33463068
effective search space used: 33463068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)