Query 537021.9.peg.348_1
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 18:31:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_348.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql9_A Caspase-7; caspase-7, c 25.0 20 0.00086 17.3 1.1 28 2-29 66-93 (173)
2 2k1i_A Mucosal alpha-defensin; 24.2 19 0.00079 17.5 0.8 15 23-37 18-32 (32)
3 1pyo_A Caspase-2; apoptosis, c 21.8 22 0.0009 17.2 0.7 28 2-29 55-82 (167)
4 1qtn_A Caspase-8; complex (pro 18.8 27 0.0011 16.8 0.7 28 2-29 52-79 (164)
5 1f1j_A Caspase-7 protease; cas 17.1 34 0.0014 16.2 0.9 29 2-30 91-119 (305)
6 2dko_A Caspase-3; low barrier 16.8 32 0.0013 16.4 0.7 27 3-29 39-65 (146)
7 2nn3_C Caspase-1; cysteine pro 14.4 42 0.0018 15.8 0.8 28 2-29 81-108 (310)
8 2fp3_A Caspase NC; apoptosis, 13.5 45 0.0019 15.6 0.7 28 2-29 81-108 (316)
9 3fxd_A Protein ICMQ; helix bun 13.3 26 0.0011 16.8 -0.5 12 18-29 30-41 (57)
10 1m72_A Caspase-1; caspase, cys 11.7 56 0.0024 15.1 0.8 28 2-29 53-80 (272)
No 1
>2ql9_A Caspase-7; caspase-7, cysteine protease, alternative splicing, apoptosis, cytoplasm, hydrolase, thiol protease, zymogen; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=25.05 E-value=20 Score=17.33 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7246799999999999745654144531
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlng 29 (42)
.+++|++++-.+|+++-|+-.+-.|+..
T Consensus 66 Gt~~D~~~L~~~f~~LgF~V~~~~nlt~ 93 (173)
T 2ql9_A 66 GTDKDAEALFKCFRSLGFDVIVYNDCSC 93 (173)
T ss_dssp THHHHHHHHHHHHHHHTEEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 8699999999999987988999728988
No 2
>2k1i_A Mucosal alpha-defensin; antimicrobial peptide, rhesus macaque, anti parallel beta sheet, antimicrobial protein; NMR {Synthetic}
Probab=24.18 E-value=19 Score=17.52 Aligned_cols=15 Identities=40% Similarity=0.862 Sum_probs=12.0
Q ss_pred HCCCCCCCEEEEEEE
Q ss_conf 414453110010110
Q 537021.9.peg.3 23 IGKNLNGAILNVCCI 37 (42)
Q Consensus 23 igknlngailnvcci 37 (42)
-.-|.||.|...||-
T Consensus 18 gscningrifslccr 32 (32)
T 2k1i_A 18 GSCNINGRIFSLCCR 32 (32)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEEEEC
T ss_conf 742287888342409
No 3
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_A
Probab=21.77 E-value=22 Score=17.22 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7246799999999999745654144531
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlng 29 (42)
++++|++++-.+|+++=|+-.+-.|++.
T Consensus 55 Gs~~D~~~L~~~f~~LgF~V~~~~nlt~ 82 (167)
T 1pyo_A 55 GGDVDHSTLVTLFKLLGYDVHVLCDQTA 82 (167)
T ss_dssp THHHHHHHHHHHHHHTTEEEEEEESCCH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 9689999999999988998999726788
No 4
>1qtn_A Caspase-8; complex (protease/inhibitor), apoptosis, dithiane-DIOL, caspase, cysteine-protease, tetramer; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 2c2z_A* 1qdu_A* 1f9e_A*
Probab=18.85 E-value=27 Score=16.75 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7246799999999999745654144531
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlng 29 (42)
.+++|++++-.+|+++-|+-.+-.|++.
T Consensus 52 Gt~~D~~~L~~~F~~Lgf~V~v~~nlt~ 79 (164)
T 1qtn_A 52 GTHLDAGALTTTFEELHFEIKPHDDCTV 79 (164)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEESCCH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 8399999999999989998999418888
No 5
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 1i4o_A 1gqf_A 3h1p_A* 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=17.14 E-value=34 Score=16.21 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 72467999999999997456541445311
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNGA 30 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlnga 30 (42)
.+++|++++-.+|+++-|+-.+..||+..
T Consensus 91 Gt~~Da~~L~~~f~~LGF~V~~~~nlt~~ 119 (305)
T 1f1j_A 91 GTDKDAEALFKCFRSLGFDVIVYNDCSCA 119 (305)
T ss_dssp THHHHHHHHHHHHHHHTEEEEEEESCCHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 85999999999999889989996189999
No 6
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation damage, tetrahedral intermediate, protease, hydrolase; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A 1rhm_A* 1rhq_A 1rhr_A* 1rhu_A* 1rhj_A* 2c2k_A* 2c2m_A* 2c2o_A* 2c1e_A* 2cjx_A 2cdr_A* ...
Probab=16.78 E-value=32 Score=16.36 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 246799999999999745654144531
Q 537021.9.peg.3 3 SDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 3 sdkdverifavfkkiffeksigknlng 29 (42)
+++|++++-.+|+++=|+-.+-.|++.
T Consensus 39 t~~D~~~L~~~f~~lgf~V~~~~nlt~ 65 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVRNKNDLTR 65 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESCCH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 189999999999988988999648998
No 7
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=14.43 E-value=42 Score=15.77 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7246799999999999745654144531
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlng 29 (42)
.+++|++++-.+|+++-|+-.+-.||..
T Consensus 81 Gt~~Da~~L~~~f~~LGF~V~~~~nlt~ 108 (310)
T 2nn3_C 81 GTNVDSDNLSKVLKTLGFKVTVFPNLKS 108 (310)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEESCCH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 8589999999999988898999528899
No 8
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=13.45 E-value=45 Score=15.59 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7246799999999999745654144531
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlng 29 (42)
.+++|++++-.+|+++=|+-.+-.||+.
T Consensus 81 Ga~~D~~~L~~~f~~LGF~V~~~~nlt~ 108 (316)
T 2fp3_A 81 GAEKDSKSLIHLFQELNFTIFPYGNVNQ 108 (316)
T ss_dssp THHHHHHHHHHHHHHTTEEEEEECSCCH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 8489999999999878998999527999
No 9
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila str} PDB: 3fxe_A
Probab=13.33 E-value=26 Score=16.79 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=9.4
Q ss_pred HHHHHHCCCCCC
Q ss_conf 745654144531
Q 537021.9.peg.3 18 FFEKSIGKNLNG 29 (42)
Q Consensus 18 ffeksigknlng 29 (42)
-|-+.|||||..
T Consensus 30 nFLRvIGKnL~e 41 (57)
T 3fxd_A 30 NFLRVIGKKLIA 41 (57)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 899999888999
No 10
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1
Probab=11.66 E-value=56 Score=15.10 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7246799999999999745654144531
Q 537021.9.peg.3 2 NSDKDVERIFAVFKKIFFEKSIGKNLNG 29 (42)
Q Consensus 2 nsdkdverifavfkkiffeksigknlng 29 (42)
.+++|++++-.+|+++-|+-.+..|++.
T Consensus 53 g~~~D~~~L~~~f~~lGF~V~~~~nlt~ 80 (272)
T 1m72_A 53 GTNVDSDNLSKVLKTLGFKVTVFPNLKS 80 (272)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEESCCH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 8489999999999988999999628999
Done!