Query 537021.9.peg.349_1
Match_columns 50
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 19:16:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_349.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1n_S 50S ribosomal protein 43.5 6.2 0.00018 20.7 0.2 22 29-50 12-33 (110)
2 >1i4j_A 50S ribosomal protein 35.9 15 0.00043 18.8 1.1 31 20-50 1-33 (110)
3 >1p42_A UDP-3-O-[3-hydroxymyri 32.2 16 0.00046 18.7 0.8 21 30-50 6-26 (39)
4 >2ves_A UDP-3-O-[3-hydroxymyri 29.2 19 0.00056 18.3 0.8 21 30-50 6-26 (39)
5 >2zjr_P 50S ribosomal protein 25.1 20 0.0006 18.1 0.3 23 28-50 11-33 (113)
6 >3bbo_U Ribosomal protein L22; 24.6 26 0.00077 17.6 0.8 23 28-50 40-62 (199)
7 >2ftc_M Mitochondrial ribosoma 17.9 38 0.0011 16.8 0.5 21 30-50 9-29 (110)
8 >1vq8_R 50S ribosomal protein 12.1 65 0.0019 15.6 0.4 23 28-50 23-45 (155)
9 >2zkr_r 60S ribosomal protein 9.2 1.3E+02 0.0039 14.1 1.1 24 27-50 22-45 (184)
10 >1exg_A EXO-1,4-beta-D-glycana 6.5 2.3E+02 0.0067 12.9 1.3 20 11-30 12-31 (110)
No 1
>>3i1n_S 50S ribosomal protein L22; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_Q 1p86_Q 1vs8_S 2aw4_S 2awb_S 1vs6_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* 2qp1_S* ... (S:)
Probab=43.48 E-value=6.2 Score=20.69 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0466776776530563210249
Q 537021.9.peg.3 29 TSLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 29 tslvtalryaqhikgmsvdnai 50 (50)
.|.--+-+-++.|+||+++.|+
T Consensus 12 ~S~kK~~~v~~~IrG~~v~~A~ 33 (110)
T 3i1n_S 12 SSAQKVRLVADLIRGKKVSQAL 33 (110)
T ss_dssp SCSTTHHHHHHHHTTSBHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHH
T ss_conf 4879999999998699099999
No 2
>>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} (A:)
Probab=35.90 E-value=15 Score=18.83 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEEEEECC--HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 055212113--0466776776530563210249
Q 537021.9.peg.3 20 MEYSGTMRN--TSLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 20 meysgtmrn--tslvtalryaqhikgmsvdnai 50 (50)
||..-..++ .|.--+-.-++.|+||+++.|+
T Consensus 1 me~~a~~~~ir~S~kK~~~va~~IrG~~v~~Al 33 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEAR 33 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 927987087624889999999998699199999
No 3
>>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:178-216)
Probab=32.19 E-value=16 Score=18.70 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 466776776530563210249
Q 537021.9.peg.3 30 SLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 30 slvtalryaqhikgmsvdnai 50 (50)
+-+..||-+--+||-|.||||
T Consensus 6 ~die~L~~~GL~~GGSLeNAi 26 (39)
T 1p42_A 6 WEIEHIKKVGLGKGGSLKNTL 26 (39)
T ss_dssp HHHHHHHHTTCCTTCCTTTCE
T ss_pred HHHHHHHHCCCCCCCCCCCCE
T ss_conf 999999976985564523436
No 4
>>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:190-228)
Probab=29.21 E-value=19 Score=18.28 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 466776776530563210249
Q 537021.9.peg.3 30 SLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 30 slvtalryaqhikgmsvdnai 50 (50)
+-|..||-.--+||-|.||||
T Consensus 6 ~eve~L~~~GLa~GGSLdNAi 26 (39)
T 2ves_A 6 RDIEYLRSQNLALGGSVENAI 26 (39)
T ss_dssp HHHHHHHHTTCSTTCSTTSSE
T ss_pred HHHHHHHHCCCCCCCCCCEEE
T ss_conf 999999862841355641359
No 5
>>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (P:22-134)
Probab=25.09 E-value=20 Score=18.13 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30466776776530563210249
Q 537021.9.peg.3 28 NTSLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 28 ntslvtalryaqhikgmsvdnai 50 (50)
..|.--+-..++.|+||+++.|+
T Consensus 11 ~~S~kK~~~v~~~IrG~~v~~A~ 33 (113)
T 2zjr_P 11 RMSPRKVRLVVDVIRGKSVQDAE 33 (113)
T ss_dssp SSCHHHHHHHHHHSTTSBHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 35889999999998699199999
No 6
>>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (U:)
Probab=24.62 E-value=26 Score=17.57 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30466776776530563210249
Q 537021.9.peg.3 28 NTSLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 28 ntslvtalryaqhikgmsvdnai 50 (50)
..|.--+-..|+.|+||+|+.|+
T Consensus 40 r~S~KK~~~va~~IrG~~v~eA~ 62 (199)
T 3bbo_U 40 SMSVDKARRVIDQIRGRSYAETL 62 (199)
T ss_dssp SSCSSSSSTTHHHHTTCBTTTTT
T ss_pred EECHHHHHHHHHHHCCCCHHHHH
T ss_conf 14879999999998699199999
No 7
>>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_M (M:)
Probab=17.86 E-value=38 Score=16.76 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 466776776530563210249
Q 537021.9.peg.3 30 SLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 30 slvtalryaqhikgmsvdnai 50 (50)
|---+-+.+..|+||+|+.|+
T Consensus 9 SpkK~r~v~~~IrG~~v~~Al 29 (110)
T 2ftc_M 9 SKDKMWYLAKLIRGMSIDQAL 29 (110)
T ss_pred CHHHHHHHHHHHCCCCHHHHH
T ss_conf 879999999998699099999
No 8
>>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (R:)
Probab=12.06 E-value=65 Score=15.59 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30466776776530563210249
Q 537021.9.peg.3 28 NTSLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 28 ntslvtalryaqhikgmsvdnai 50 (50)
.+|.--+-.-++.|+||+++.|+
T Consensus 23 ~~S~kK~~~va~~Irg~~v~~A~ 45 (155)
T 1vq8_R 23 QMSFKHSKAIAREIKGKTAGEAV 45 (155)
T ss_dssp CSCHHHHHHHHHHHTTSBHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 57679999999997798999999
No 9
>>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (r:)
Probab=9.23 E-value=1.3e+02 Score=14.08 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 130466776776530563210249
Q 537021.9.peg.3 27 RNTSLVTALRYAQHIKGMSVDNAI 50 (50)
Q Consensus 27 rntslvtalryaqhikgmsvdnai 50 (50)
-..|.--+-.-++.|+||+++.|+
T Consensus 22 i~~S~kK~~~va~~Irg~~v~~A~ 45 (184)
T 2zkr_r 22 LRVHFKNTRETAQAIKGMHIRKAT 45 (184)
T ss_dssp CCSCHHHHHHHHHHHTTSBHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 747669999999987898799999
No 10
>>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} (A:)
Probab=6.50 E-value=2.3e+02 Score=12.88 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=0.0
Q ss_pred EEECCCCCCEEEEEEECCHH
Q ss_conf 21214357505521211304
Q 537021.9.peg.3 11 YQLSSWNGNMEYSGTMRNTS 30 (50)
Q Consensus 11 yqlsswngnmeysgtmrnts 30 (50)
|+.++|++.+...-+..|++
T Consensus 12 ~~v~~W~~G~~~~i~vtN~~ 31 (110)
T 1exg_A 12 WGVNQWNTGFTANVTVKNTS 31 (110)
T ss_dssp CCEEESSSEEEEEEEEEECS
T ss_pred EEECCCCCCEEEEEEEEECC
T ss_conf 99753899728999999499
Done!