Query         537021.9.peg.349_1
Match_columns 50
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 19:01:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_349.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1i4ja_ d.55.1.1 (A:) Ribosoma  37.7     5.4 0.00039   19.1   1.1   31   20-50      1-33  (110)
  2 d1vqor1 d.55.1.1 (R:1-150) Rib  21.3      15  0.0011   16.8   1.0   26   25-50     19-44  (150)
  3 d2zjrp1 d.55.1.1 (P:8-134) Rib  20.5      12 0.00084   17.4   0.3   22   29-50     26-47  (127)
  4 d2gycq1 d.55.1.1 (Q:5-110) Rib  13.2      12  0.0009   17.2  -1.0   16   35-50     14-29  (106)
  5 d1exha_ b.2.2.1 (A:) Exo-1,4-b   5.0 1.2E+02  0.0087   12.3   1.5   20   11-30     12-31  (110)
  6 d1p42a2 d.14.1.7 (A:128-280) U   4.6 1.1E+02  0.0079   12.5   0.8   22   29-50     62-83  (147)
  7 d1n9ra_ b.38.1.1 (A:) Small nu   4.2 1.4E+02    0.01   12.0   1.4   13   17-29     15-27  (68)
  8 d2h9fa1 d.21.1.4 (A:1-182) Hyp   3.7 1.5E+02   0.011   11.8   2.1   26    6-31     84-109 (182)
  9 d1nuia1 e.13.1.2 (A:64-255) Pr   3.7 1.5E+02   0.011   11.8   0.9   31    7-38      2-32  (192)
 10 d1fs1b1 a.157.1.1 (B:86-140) C   3.0 1.8E+02   0.013   11.4   1.2   15   33-47     34-48  (55)

No 1  
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}
Probab=37.65  E-value=5.4  Score=19.05  Aligned_cols=31  Identities=26%  Similarity=0.205  Sum_probs=20.4

Q ss_pred             EEEEEEECC--HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             055212113--0466776776530563210249
Q 537021.9.peg.3   20 MEYSGTMRN--TSLVTALRYAQHIKGMSVDNAI   50 (50)
Q Consensus        20 meysgtmrn--tslvtalryaqhikgmsvdnai   50 (50)
                      ||.-.+.|+  .|---+-+.+..|+||+|+.|+
T Consensus         1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al   33 (110)
T d1i4ja_           1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEAR   33 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHH
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf             907988086634889999999998699199999


No 2  
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.27  E-value=15  Score=16.82  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             EECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             21130466776776530563210249
Q 537021.9.peg.3   25 TMRNTSLVTALRYAQHIKGMSVDNAI   50 (50)
Q Consensus        25 tmrntslvtalryaqhikgmsvdnai   50 (50)
                      ..-..|.-.+-.-+..|+||+||.|+
T Consensus        19 ~~~riS~kK~~~va~~IrGk~v~~A~   44 (150)
T d1vqor1          19 RERQMSFKHSKAIAREIKGKTAGEAV   44 (150)
T ss_dssp             EEECSCHHHHHHHHHHHTTSBHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf             78857689999999998598799999


No 3  
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.50  E-value=12  Score=17.40  Aligned_cols=22  Identities=27%  Similarity=0.173  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             0466776776530563210249
Q 537021.9.peg.3   29 TSLVTALRYAQHIKGMSVDNAI   50 (50)
Q Consensus        29 tslvtalryaqhikgmsvdnai   50 (50)
                      .|.--+-+-++.|+||+||.|+
T Consensus        26 ~Sp~K~r~v~~~IrG~~v~eAl   47 (127)
T d2zjrp1          26 MSPRKVRLVVDVIRGKSVQDAE   47 (127)
T ss_dssp             SCHHHHHHHHHHSTTSBHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHHHH
T ss_conf             5889999999998699199999


No 4  
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}
Probab=13.15  E-value=12  Score=17.24  Aligned_cols=16  Identities=31%  Similarity=0.370  Sum_probs=10.7

Q ss_pred             HHHHHHHCCCCCCCCC
Q ss_conf             6776530563210249
Q 537021.9.peg.3   35 LRYAQHIKGMSVDNAI   50 (50)
Q Consensus        35 lryaqhikgmsvdnai   50 (50)
                      -..+..|+||+||.|+
T Consensus        14 r~va~~IrG~~v~~A~   29 (106)
T d2gycq1          14 RLVADLIRGKKVSQAL   29 (106)
T ss_dssp             CSSSSSSSSSCSHHHH
T ss_pred             HHHHHHHCCCCHHHHH
T ss_conf             9999998699199999


No 5  
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}
Probab=4.98  E-value=1.2e+02  Score=12.33  Aligned_cols=20  Identities=30%  Similarity=0.592  Sum_probs=11.1

Q ss_pred             EEECCCCCCEEEEEEECCHH
Q ss_conf             21214357505521211304
Q 537021.9.peg.3   11 YQLSSWNGNMEYSGTMRNTS   30 (50)
Q Consensus        11 yqlsswngnmeysgtmrnts   30 (50)
                      |+.++|++.....=+.+|++
T Consensus        12 y~~n~W~~Gf~~~vtVtN~~   31 (110)
T d1exha_          12 WGVNQWNTGFTANVTVKNTS   31 (110)
T ss_dssp             CCEEECSSCEEEEEEEEECS
T ss_pred             EEECCCCCCCEEEEEEEECC
T ss_conf             99764799868999999499


No 6  
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=4.64  E-value=1.1e+02  Score=12.53  Aligned_cols=22  Identities=18%  Similarity=0.156  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             0466776776530563210249
Q 537021.9.peg.3   29 TSLVTALRYAQHIKGMSVDNAI   50 (50)
Q Consensus        29 tslvtalryaqhikgmsvdnai   50 (50)
                      -.-+.+|+-..-+||-|.+|||
T Consensus        62 ~~eie~L~~~Gl~~Ggsl~nai   83 (147)
T d1p42a2          62 DWEIEHIKKVGLGKGGSLKNTL   83 (147)
T ss_dssp             HHHHHHHHHTTCCTTCCTTTCE
T ss_pred             HHHHHHHHCCCCCCCCCCCCCE
T ss_conf             9989998655712773601232


No 7  
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.16  E-value=1.4e+02  Score=12.00  Aligned_cols=13  Identities=38%  Similarity=0.567  Sum_probs=9.1

Q ss_pred             CCCEEEEEEECCH
Q ss_conf             5750552121130
Q 537021.9.peg.3   17 NGNMEYSGTMRNT   29 (50)
Q Consensus        17 ngnmeysgtmrnt   29 (50)
                      +|..+|.|+++..
T Consensus        15 ~~~~~~~G~L~~~   27 (68)
T d1n9ra_          15 FNSTEYRGTLVST   27 (68)
T ss_dssp             STTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEE
T ss_conf             4999999999999


No 8  
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.66  E-value=1.5e+02  Score=11.77  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             EEEEEEEECCCCCCEEEEEEECCHHH
Q ss_conf             88676212143575055212113046
Q 537021.9.peg.3    6 IKYYFYQLSSWNGNMEYSGTMRNTSL   31 (50)
Q Consensus         6 ikyyfyqlsswngnmeysgtmrntsl   31 (50)
                      |.|.|-|++-=..-..|++.--|-+-
T Consensus        84 vDY~F~QV~v~~~~VD~~~NCGNm~s  109 (182)
T d2h9fa1          84 VDYLYGQVSIDKPFVDWSGNCGNLST  109 (182)
T ss_dssp             EEEEEEEECSSSSCEECSCCCHHHHH
T ss_pred             EEEEEEEEEECCCEEECCCCCCCHHH
T ss_conf             57899988615643203666452333


No 9  
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase protein {Bacteriophage T7 [TaxId: 10760]}
Probab=3.65  E-value=1.5e+02  Score=11.77  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             EEEEEEECCCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf             86762121435750552121130466776776
Q 537021.9.peg.3    7 KYYFYQLSSWNGNMEYSGTMRNTSLVTALRYA   38 (50)
Q Consensus         7 kyyfyqlsswngnmeysgtmrntslvtalrya   38 (50)
                      +|..+.+++++|..+|- +-|+-|.-|+-+|.
T Consensus         2 ~~~~~~~~~~~g~~~~L-~~RGIs~et~~~~~   32 (192)
T d1nuia1           2 TYNVWNFGESNGRYSAL-TARGISKETCQKAG   32 (192)
T ss_dssp             CBCCBCGGGTTCBCCCB-GGGTBCHHHHHHHT
T ss_pred             CEEECCCCCCCCCHHHH-HHCCCCHHHHHHCC
T ss_conf             16775676577781234-55839999999779


No 10 
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.00  E-value=1.8e+02  Score=11.42  Aligned_cols=15  Identities=33%  Similarity=0.361  Sum_probs=10.9

Q ss_pred             HHHHHHHHHCCCCCC
Q ss_conf             776776530563210
Q 537021.9.peg.3   33 TALRYAQHIKGMSVD   47 (50)
Q Consensus        33 talryaqhikgmsvd   47 (50)
                      +.-+-|..|||+|+.
T Consensus        34 ~c~~vA~~ikgKt~e   48 (55)
T d1fs1b1          34 TCKTVANMIKGKTPE   48 (55)
T ss_dssp             HHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHCCCCHH
T ss_conf             999999988699999


Done!