BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.349_1
         (50 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.349_1 
          Length = 50

 Score =  104 bits (260), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 1  MNFLLIKYYFYQLSSWNGNMEYSGTMRNTSLVTALRYAQHIKGMSVDNAI 50
          MNFLLIKYYFYQLSSWNGNMEYSGTMRNTSLVTALRYAQHIKGMSVDNAI
Sbjct: 1  MNFLLIKYYFYQLSSWNGNMEYSGTMRNTSLVTALRYAQHIKGMSVDNAI 50


>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 562

 Score = 20.8 bits (42), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 2   NFLLIKYYFYQLSSWN 17
           NF+   +Y  QLS WN
Sbjct: 240 NFMTEWHYDQQLSQWN 255


>537021.9.peg.1096_1 
          Length = 53

 Score = 20.0 bits (40), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 22 YSGTMRNTSLVTALRYAQHI 41
          YS    + S + +L+YA HI
Sbjct: 8  YSADKISESRIFSLKYADHI 27


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.132    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,810
Number of Sequences: 1233
Number of extensions: 775
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 50
length of database: 328,796
effective HSP length: 23
effective length of query: 27
effective length of database: 300,437
effective search space:  8111799
effective search space used:  8111799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.1 bits)
S2: 31 (16.5 bits)