Query         537021.9.peg.36_1
Match_columns 29
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Sun May 22 16:27:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_36.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3kf8_B Protein TEN1; OB fold;  14.1      82  0.0024   15.1   1.4   12    2-13     80-91  (102)
  2 >1l6h_A LTP2, non-specific lip   4.2 1.5E+02  0.0044   13.9  -0.8   16   13-28     15-30  (69)
  3 >1oy5_A TRNA (guanine-N(1)-)-m   4.1 3.2E+02  0.0096   12.2   0.8   15    2-16    111-125 (171)
  4 >2pv4_A Uncharacterized protei   4.0 1.5E+02  0.0045   13.9  -0.9   22    8-29    107-128 (145)
  5 >2jz1_A Protein doublesex; sex   4.0   2E+02  0.0059   13.3  -0.3   12    6-17     65-76  (80)
  6 >2v9p_A Replication protein E1   3.9 3.7E+02   0.011   12.0   1.3   18   11-28     49-66  (76)
  7 >2io8_A Bifunctional glutathio   3.6   3E+02   0.009   12.4   0.3   10    6-15    176-185 (205)
  8 >1uz5_A MOEA protein, 402AA lo   3.4 3.6E+02   0.011   12.0   0.6    8    8-15      7-14  (95)
  9 >1dp7_P MHC class II transcrip   3.3 3.7E+02   0.011   12.0   0.6    9    7-15     68-76  (76)
 10 >2dkh_A 3-hydroxybenzoate hydr   3.2 2.3E+02  0.0069   12.9  -0.5   11    5-15      2-12  (162)

No 1  
>>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404} (B:1-102)
Probab=14.12  E-value=82  Score=15.13  Aligned_cols=12  Identities=42%  Similarity=0.689  Sum_probs=8.5

Q ss_pred             EEEEEEECCEEE
Q ss_conf             068451056232
Q 537021.9.peg.3    2 VRIIGHYDGLAV   13 (29)
Q Consensus         2 vriighydglav   13 (29)
                      |.|.|-|||-.+
T Consensus        80 VnI~g~YdGe~I   91 (102)
T 3kf8_B           80 VNIDAFYDGESI   91 (102)
T ss_dssp             EEEEEEECSSCE
T ss_pred             EEEEEEECCCCC
T ss_conf             999997177504


No 2  
>>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} (A:)
Probab=4.20  E-value=1.5e+02  Score=13.88  Aligned_cols=16  Identities=31%  Similarity=0.762  Sum_probs=10.2

Q ss_pred             EEHHHHHHHHHHHHHC
Q ss_conf             2005789899999730
Q 537021.9.peg.3   13 VRSTAKVTQSCCRMLK   28 (29)
Q Consensus        13 vrstakvtqsccrmlk   28 (29)
                      +-+.++.+..||..||
T Consensus        15 i~~g~~Ps~~CC~kLk   30 (69)
T 1l6h_A           15 IAGGARPTAACCSSLR   30 (69)
T ss_dssp             HTTCCSTTHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHH
T ss_conf             8569998099999998


No 3  
>>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171)
Probab=4.05  E-value=3.2e+02  Score=12.23  Aligned_cols=15  Identities=33%  Similarity=0.663  Sum_probs=10.3

Q ss_pred             EEEEEEECCEEEEHH
Q ss_conf             068451056232005
Q 537021.9.peg.3    2 VRIIGHYDGLAVRST   16 (29)
Q Consensus         2 vriighydglavrst   16 (29)
                      +-|-|||.|.--|--
T Consensus       111 iliCGrYEGiDeRv~  125 (171)
T 1oy5_A          111 MIICGRYEGVDERVK  125 (171)
T ss_dssp             EEEECBTTCBCGGGG
T ss_pred             EEEECCCCCHHHHHH
T ss_conf             999536325889987


No 4  
>>2pv4_A Uncharacterized protein; YP_928494.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Shewanella amazonensis SB2B} (A:)
Probab=4.02  E-value=1.5e+02  Score=13.86  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=14.9

Q ss_pred             ECCEEEEHHHHHHHHHHHHHCC
Q ss_conf             0562320057898999997309
Q 537021.9.peg.3    8 YDGLAVRSTAKVTQSCCRMLKK   29 (29)
Q Consensus         8 ydglavrstakvtqsccrmlkk   29 (29)
                      |+|.-.|-.-++-..|++-|||
T Consensus       107 ~~~~~~~l~D~~LKd~vKqLKK  128 (145)
T 2pv4_A          107 YSGLYVRVAEAALKESVKKLKK  128 (145)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999998


No 5  
>>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster} (A:)
Probab=3.96  E-value=2e+02  Score=13.26  Aligned_cols=12  Identities=42%  Similarity=0.650  Sum_probs=8.5

Q ss_pred             EEECCEEEEHHH
Q ss_conf             510562320057
Q 537021.9.peg.3    6 GHYDGLAVRSTA   17 (29)
Q Consensus         6 ghydglavrsta   17 (29)
                      .-|||...|+|.
T Consensus        65 n~ydg~elr~~t   76 (80)
T 2jz1_A           65 NIYDGGELRNTT   76 (80)
T ss_dssp             SSCCSSTTCCSC
T ss_pred             HCCCHHHHHHHH
T ss_conf             215427775102


No 6  
>>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:1-76)
Probab=3.92  E-value=3.7e+02  Score=11.98  Aligned_cols=18  Identities=39%  Similarity=0.650  Sum_probs=13.6

Q ss_pred             EEEEHHHHHHHHHHHHHC
Q ss_conf             232005789899999730
Q 537021.9.peg.3   11 LAVRSTAKVTQSCCRMLK   28 (29)
Q Consensus        11 lavrstakvtqsccrmlk   28 (29)
                      |+-.+-||....||.|.+
T Consensus        49 L~sN~QaK~VkDCa~MvR   66 (76)
T 2v9p_A           49 LATNSQAKHVKDCATMVR   66 (76)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHH
T ss_conf             861450879999999999


No 7  
>>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} (A:202-358,A:572-619)
Probab=3.55  E-value=3e+02  Score=12.38  Aligned_cols=10  Identities=40%  Similarity=0.946  Sum_probs=0.0

Q ss_pred             EEECCEEEEH
Q ss_conf             5105623200
Q 537021.9.peg.3    6 GHYDGLAVRS   15 (29)
Q Consensus         6 ghydglavrs   15 (29)
                      |||.|-.+||
T Consensus       176 ~~~~~~~~~~  185 (205)
T 2io8_A          176 GNYGGTCLRG  185 (205)
T ss_dssp             TEEEEEEEEE
T ss_pred             CEEEEEEEEC
T ss_conf             9987999952


No 8  
>>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:50-144)
Probab=3.42  E-value=3.6e+02  Score=12.00  Aligned_cols=8  Identities=63%  Similarity=0.908  Sum_probs=0.0

Q ss_pred             ECCEEEEH
Q ss_conf             05623200
Q 537021.9.peg.3    8 YDGLAVRS   15 (29)
Q Consensus         8 ydglavrs   15 (29)
                      .||.||++
T Consensus         7 mDGyAv~~   14 (95)
T 1uz5_A            7 VDGYAVRA   14 (95)
T ss_dssp             SSEEEECG
T ss_pred             CCEEEEEC
T ss_conf             34379952


No 9  
>>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} (P:)
Probab=3.31  E-value=3.7e+02  Score=11.95  Aligned_cols=9  Identities=44%  Similarity=1.032  Sum_probs=0.0

Q ss_pred             EECCEEEEH
Q ss_conf             105623200
Q 537021.9.peg.3    7 HYDGLAVRS   15 (29)
Q Consensus         7 hydglavrs   15 (29)
                      ||.|+.+|+
T Consensus        68 hY~Gir~ra   76 (76)
T 1dp7_P           68 HYYGLRIKA   76 (76)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
T ss_conf             886478539


No 10 
>>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:70-139,A:228-319)
Probab=3.25  E-value=2.3e+02  Score=12.92  Aligned_cols=11  Identities=45%  Similarity=0.942  Sum_probs=0.0

Q ss_pred             EEEECCEEEEH
Q ss_conf             45105623200
Q 537021.9.peg.3    5 IGHYDGLAVRS   15 (29)
Q Consensus         5 ighydglavrs   15 (29)
                      +||-||+..|+
T Consensus         2 ~GqADGiq~RT   12 (162)
T 2dkh_A            2 LGQADGIACRT   12 (162)
T ss_dssp             SCSCCEECHHH
T ss_pred             CCCEEEECHHH
T ss_conf             88289988899


Done!