Query 537021.9.peg.36_1 Match_columns 29 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Sun May 22 16:27:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_36.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3kf8_B Protein TEN1; OB fold; 14.1 82 0.0024 15.1 1.4 12 2-13 80-91 (102) 2 >1l6h_A LTP2, non-specific lip 4.2 1.5E+02 0.0044 13.9 -0.8 16 13-28 15-30 (69) 3 >1oy5_A TRNA (guanine-N(1)-)-m 4.1 3.2E+02 0.0096 12.2 0.8 15 2-16 111-125 (171) 4 >2pv4_A Uncharacterized protei 4.0 1.5E+02 0.0045 13.9 -0.9 22 8-29 107-128 (145) 5 >2jz1_A Protein doublesex; sex 4.0 2E+02 0.0059 13.3 -0.3 12 6-17 65-76 (80) 6 >2v9p_A Replication protein E1 3.9 3.7E+02 0.011 12.0 1.3 18 11-28 49-66 (76) 7 >2io8_A Bifunctional glutathio 3.6 3E+02 0.009 12.4 0.3 10 6-15 176-185 (205) 8 >1uz5_A MOEA protein, 402AA lo 3.4 3.6E+02 0.011 12.0 0.6 8 8-15 7-14 (95) 9 >1dp7_P MHC class II transcrip 3.3 3.7E+02 0.011 12.0 0.6 9 7-15 68-76 (76) 10 >2dkh_A 3-hydroxybenzoate hydr 3.2 2.3E+02 0.0069 12.9 -0.5 11 5-15 2-12 (162) No 1 >>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404} (B:1-102) Probab=14.12 E-value=82 Score=15.13 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=8.5 Q ss_pred EEEEEEECCEEE Q ss_conf 068451056232 Q 537021.9.peg.3 2 VRIIGHYDGLAV 13 (29) Q Consensus 2 vriighydglav 13 (29) |.|.|-|||-.+ T Consensus 80 VnI~g~YdGe~I 91 (102) T 3kf8_B 80 VNIDAFYDGESI 91 (102) T ss_dssp EEEEEEECSSCE T ss_pred EEEEEEECCCCC T ss_conf 999997177504 No 2 >>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} (A:) Probab=4.20 E-value=1.5e+02 Score=13.88 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=10.2 Q ss_pred EEHHHHHHHHHHHHHC Q ss_conf 2005789899999730 Q 537021.9.peg.3 13 VRSTAKVTQSCCRMLK 28 (29) Q Consensus 13 vrstakvtqsccrmlk 28 (29) +-+.++.+..||..|| T Consensus 15 i~~g~~Ps~~CC~kLk 30 (69) T 1l6h_A 15 IAGGARPTAACCSSLR 30 (69) T ss_dssp HTTCCSTTHHHHHHHH T ss_pred HHCCCCCCHHHHHHHH T ss_conf 8569998099999998 No 3 >>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:1-171) Probab=4.05 E-value=3.2e+02 Score=12.23 Aligned_cols=15 Identities=33% Similarity=0.663 Sum_probs=10.3 Q ss_pred EEEEEEECCEEEEHH Q ss_conf 068451056232005 Q 537021.9.peg.3 2 VRIIGHYDGLAVRST 16 (29) Q Consensus 2 vriighydglavrst 16 (29) +-|-|||.|.--|-- T Consensus 111 iliCGrYEGiDeRv~ 125 (171) T 1oy5_A 111 MIICGRYEGVDERVK 125 (171) T ss_dssp EEEECBTTCBCGGGG T ss_pred EEEECCCCCHHHHHH T ss_conf 999536325889987 No 4 >>2pv4_A Uncharacterized protein; YP_928494.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Shewanella amazonensis SB2B} (A:) Probab=4.02 E-value=1.5e+02 Score=13.86 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=14.9 Q ss_pred ECCEEEEHHHHHHHHHHHHHCC Q ss_conf 0562320057898999997309 Q 537021.9.peg.3 8 YDGLAVRSTAKVTQSCCRMLKK 29 (29) Q Consensus 8 ydglavrstakvtqsccrmlkk 29 (29) |+|.-.|-.-++-..|++-||| T Consensus 107 ~~~~~~~l~D~~LKd~vKqLKK 128 (145) T 2pv4_A 107 YSGLYVRVAEAALKESVKKLKK 128 (145) T ss_dssp HHHHHHHHHHTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999998 No 5 >>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster} (A:) Probab=3.96 E-value=2e+02 Score=13.26 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=8.5 Q ss_pred EEECCEEEEHHH Q ss_conf 510562320057 Q 537021.9.peg.3 6 GHYDGLAVRSTA 17 (29) Q Consensus 6 ghydglavrsta 17 (29) .-|||...|+|. T Consensus 65 n~ydg~elr~~t 76 (80) T 2jz1_A 65 NIYDGGELRNTT 76 (80) T ss_dssp SSCCSSTTCCSC T ss_pred HCCCHHHHHHHH T ss_conf 215427775102 No 6 >>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* (A:1-76) Probab=3.92 E-value=3.7e+02 Score=11.98 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=13.6 Q ss_pred EEEEHHHHHHHHHHHHHC Q ss_conf 232005789899999730 Q 537021.9.peg.3 11 LAVRSTAKVTQSCCRMLK 28 (29) Q Consensus 11 lavrstakvtqsccrmlk 28 (29) |+-.+-||....||.|.+ T Consensus 49 L~sN~QaK~VkDCa~MvR 66 (76) T 2v9p_A 49 LATNSQAKHVKDCATMVR 66 (76) T ss_dssp TTCTTHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHH T ss_conf 861450879999999999 No 7 >>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} (A:202-358,A:572-619) Probab=3.55 E-value=3e+02 Score=12.38 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=0.0 Q ss_pred EEECCEEEEH Q ss_conf 5105623200 Q 537021.9.peg.3 6 GHYDGLAVRS 15 (29) Q Consensus 6 ghydglavrs 15 (29) |||.|-.+|| T Consensus 176 ~~~~~~~~~~ 185 (205) T 2io8_A 176 GNYGGTCLRG 185 (205) T ss_dssp TEEEEEEEEE T ss_pred CEEEEEEEEC T ss_conf 9987999952 No 8 >>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} (A:50-144) Probab=3.42 E-value=3.6e+02 Score=12.00 Aligned_cols=8 Identities=63% Similarity=0.908 Sum_probs=0.0 Q ss_pred ECCEEEEH Q ss_conf 05623200 Q 537021.9.peg.3 8 YDGLAVRS 15 (29) Q Consensus 8 ydglavrs 15 (29) .||.||++ T Consensus 7 mDGyAv~~ 14 (95) T 1uz5_A 7 VDGYAVRA 14 (95) T ss_dssp SSEEEECG T ss_pred CCEEEEEC T ss_conf 34379952 No 9 >>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} (P:) Probab=3.31 E-value=3.7e+02 Score=11.95 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=0.0 Q ss_pred EECCEEEEH Q ss_conf 105623200 Q 537021.9.peg.3 7 HYDGLAVRS 15 (29) Q Consensus 7 hydglavrs 15 (29) ||.|+.+|+ T Consensus 68 hY~Gir~ra 76 (76) T 1dp7_P 68 HYYGLRIKA 76 (76) T ss_dssp EEEEEEECC T ss_pred EEEEEEECC T ss_conf 886478539 No 10 >>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:70-139,A:228-319) Probab=3.25 E-value=2.3e+02 Score=12.92 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=0.0 Q ss_pred EEEECCEEEEH Q ss_conf 45105623200 Q 537021.9.peg.3 5 IGHYDGLAVRS 15 (29) Q Consensus 5 ighydglavrs 15 (29) +||-||+..|+ T Consensus 2 ~GqADGiq~RT 12 (162) T 2dkh_A 2 LGQADGIACRT 12 (162) T ss_dssp SCSCCEECHHH T ss_pred CCCEEEECHHH T ss_conf 88289988899 Done!