Query 537021.9.peg.36_1
Match_columns 29
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Sun May 22 22:39:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_36.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kf8_B Protein TEN1; OB fold; 12.1 72 0.003 14.7 1.4 12 2-13 80-91 (123)
2 3glv_A Lipopolysaccharide core 4.4 2.4E+02 0.0099 12.2 1.3 13 1-13 2-16 (143)
3 3kyq_A YKT6, synaptobrevin hom 3.3 1.9E+02 0.0081 12.6 -0.1 13 15-27 187-199 (199)
4 1mrz_A Riboflavin kinase/FMN a 3.1 3.1E+02 0.013 11.6 1.1 13 1-13 1-13 (293)
5 2fhw_A Relaxin 3 (prorelaxin H 3.1 3.1E+02 0.013 11.6 1.5 9 17-25 4-12 (26)
6 2jz1_A Protein doublesex; sex 3.0 1.8E+02 0.0075 12.8 -0.6 10 8-17 67-76 (80)
7 1l6h_A LTP2, non-specific lipi 2.9 1.6E+02 0.0069 12.9 -0.8 17 12-28 14-30 (69)
8 1j3g_A AMPD protein, AMPD; mix 2.8 2.8E+02 0.012 11.8 0.3 7 3-9 150-156 (187)
9 3cyp_B Chemotaxis protein MOTB 2.7 3.4E+02 0.014 11.4 1.3 14 2-15 39-52 (138)
10 1n89_A Lipid transfer protein; 2.5 1.5E+02 0.0065 13.1 -1.3 17 12-28 13-29 (67)
No 1
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=12.10 E-value=72 Score=14.66 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=8.9
Q ss_pred EEEEEEECCEEE
Q ss_conf 068451056232
Q 537021.9.peg.3 2 VRIIGHYDGLAV 13 (29)
Q Consensus 2 vriighydglav 13 (29)
|.|.|-|||-.+
T Consensus 80 VnI~g~YdGe~I 91 (123)
T 3kf8_B 80 VNIDAFYDGESI 91 (123)
T ss_dssp EEEEEEECSSCE
T ss_pred EEEEEEECCCCC
T ss_conf 999997177504
No 2
>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=4.36 E-value=2.4e+02 Score=12.17 Aligned_cols=13 Identities=38% Similarity=0.835 Sum_probs=6.8
Q ss_pred CEEEE--EEECCEEE
Q ss_conf 90684--51056232
Q 537021.9.peg.3 1 MVRII--GHYDGLAV 13 (29)
Q Consensus 1 mvrii--ghydglav 13 (29)
|.|++ |.+|++-.
T Consensus 2 M~rV~~~G~FD~~H~ 16 (143)
T 3glv_A 2 MIRVMATGVFDILHL 16 (143)
T ss_dssp CCEEEEEECCSSCCH
T ss_pred CEEEEEEEEECCCCH
T ss_conf 789999857899989
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasm, cytoplasmic vesicle, ER-golgi transport, golgi apparatus; HET: DPV; 2.44A {Rattus norvegicus}
Probab=3.35 E-value=1.9e+02 Score=12.59 Aligned_cols=13 Identities=38% Similarity=0.938 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0578989999973
Q 537021.9.peg.3 15 STAKVTQSCCRML 27 (29)
Q Consensus 15 stakvtqsccrml 27 (29)
.+||-..+||+++
T Consensus 187 k~Akk~n~cC~~m 199 (199)
T 3kyq_A 187 KTARKQNSCCAIM 199 (199)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999997576329
No 4
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel, nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=3.10 E-value=3.1e+02 Score=11.57 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=9.2
Q ss_pred CEEEEEEECCEEE
Q ss_conf 9068451056232
Q 537021.9.peg.3 1 MVRIIGHYDGLAV 13 (29)
Q Consensus 1 mvriighydglav 13 (29)
||--||.+||+-.
T Consensus 1 ~VvaIG~FDGvH~ 13 (293)
T 1mrz_A 1 MVVSIGVFDGVHI 13 (293)
T ss_dssp -CEEEECCTTCCH
T ss_pred CEEEEECCHHHHH
T ss_conf 9999950620138
No 5
>2fhw_A Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic}
Probab=3.08 E-value=3.1e+02 Score=11.56 Aligned_cols=9 Identities=44% Similarity=1.209 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 789899999
Q 537021.9.peg.3 17 AKVTQSCCR 25 (29)
Q Consensus 17 akvtqsccr 25 (29)
|.+..+||.
T Consensus 4 ag~ss~cck 12 (26)
T 2fhw_A 4 AGLSSSCCK 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHCCCC
T ss_conf 011010102
No 6
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=2.96 E-value=1.8e+02 Score=12.76 Aligned_cols=10 Identities=50% Similarity=0.840 Sum_probs=0.0
Q ss_pred ECCEEEEHHH
Q ss_conf 0562320057
Q 537021.9.peg.3 8 YDGLAVRSTA 17 (29)
Q Consensus 8 ydglavrsta 17 (29)
|||+..|+++
T Consensus 67 y~~~elr~~t 76 (80)
T 2jz1_A 67 YDGGELRNTT 76 (80)
T ss_dssp CCSSTTCCSC
T ss_pred CCHHHHHHHH
T ss_conf 3268888655
No 7
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=2.92 E-value=1.6e+02 Score=12.94 Aligned_cols=17 Identities=35% Similarity=0.765 Sum_probs=0.0
Q ss_pred EEEHHHHHHHHHHHHHC
Q ss_conf 32005789899999730
Q 537021.9.peg.3 12 AVRSTAKVTQSCCRMLK 28 (29)
Q Consensus 12 avrstakvtqsccrmlk 28 (29)
|+-+.+.-+..||..||
T Consensus 14 Ai~~g~~PS~~CC~kLk 30 (69)
T 1l6h_A 14 AIAGGARPTAACCSSLR 30 (69)
T ss_dssp HHTTCCSTTHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHH
T ss_conf 88569998099999998
No 8
>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter freundii} SCOP: d.118.1.1
Probab=2.81 E-value=2.8e+02 Score=11.77 Aligned_cols=7 Identities=29% Similarity=0.786 Sum_probs=0.0
Q ss_pred EEEEEEC
Q ss_conf 6845105
Q 537021.9.peg.3 3 RIIGHYD 9 (29)
Q Consensus 3 riighyd 9 (29)
+|+||+|
T Consensus 150 ~IvgH~d 156 (187)
T 1j3g_A 150 NMTGHCN 156 (187)
T ss_dssp CEECSST
T ss_pred CEEEEHH
T ss_conf 2888001
No 9
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=2.75 E-value=3.4e+02 Score=11.36 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEEEECCEEEEH
Q ss_conf 06845105623200
Q 537021.9.peg.3 2 VRIIGHYDGLAVRS 15 (29)
Q Consensus 2 vriighydglavrs 15 (29)
+.|+||-|....++
T Consensus 39 I~I~GhTD~~~~~~ 52 (138)
T 3cyp_B 39 INVRGFTDDTPLVK 52 (138)
T ss_dssp EEEEEECCCCCC--
T ss_pred EEEEEECCCCCCCC
T ss_conf 99988528988777
No 10
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=2.53 E-value=1.5e+02 Score=13.07 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=0.0
Q ss_pred EEEHHHHHHHHHHHHHC
Q ss_conf 32005789899999730
Q 537021.9.peg.3 12 AVRSTAKVTQSCCRMLK 28 (29)
Q Consensus 12 avrstakvtqsccrmlk 28 (29)
|+-+.++-+..||..||
T Consensus 13 Ai~~g~~PS~~CC~kLk 29 (67)
T 1n89_A 13 AILSGAKPSGECCGNLR 29 (67)
T ss_dssp HHTTCCCCCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHH
T ss_conf 88469998199999898
Done!