Query         537021.9.peg.360_1
Match_columns 52
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 01:05:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_360.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2cy7_A Cysteine protease APG4B   5.8      79  0.0033   15.0  -0.6   26    3-28     32-61  (396)
  2 1szh_A HER-1 protein; extended   4.6 2.3E+02  0.0096   12.9   1.2   14   24-37     66-79  (161)
  3 2kdp_A Histone deacetylase com   4.6      86  0.0036   14.9  -1.0   21   30-50      4-24  (71)
  4 1m5i_A APC protein; coiled-coi   4.4 1.3E+02  0.0055   14.0  -0.2   12   18-29     29-40  (125)
  5 3ech_C 25-MER fragent of prote   4.0 1.1E+02  0.0048   14.3  -0.8   11   33-43     15-25  (26)
  6 2p82_A Cysteine protease ATG4A   3.0 1.7E+02   0.007   13.5  -0.7   26    3-28     28-57  (355)
  7 2qv3_A VACA, vacuolating cytot   3.0 1.9E+02  0.0081   13.2  -0.4   27    4-30    204-232 (457)
  8 1mhn_A SurviVal motor neuron p   2.4 2.9E+02   0.012   12.4  -0.1   42    6-50      3-46  (59)
  9 2id1_A Hypothetical protein; a   2.3 2.9E+02   0.012   12.4  -0.2   10   10-19     83-92  (130)
 10 1fy7_A ESA1 histone acetyltran   2.2 3.1E+02   0.013   12.2  -0.2   12    8-19    124-135 (278)

No 1  
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=5.79  E-value=79  Score=15.04  Aligned_cols=26  Identities=27%  Similarity=0.747  Sum_probs=15.9

Q ss_pred             CCCCCCC----CEEHHEHHHHHHHHEEHHH
Q ss_conf             1220147----4021031223012212112
Q 537021.9.peg.3    3 LGARFKS----GAVIVHFFSKVWFYYQLNL   28 (52)
Q Consensus         3 lgarfks----gavivhffskvwfyyqlnl   28 (52)
                      ||-+|+.    .+..-.|.|+.||-|.-|.
T Consensus        32 LG~~y~~~~~~~~f~~d~~S~iWfTYR~~F   61 (396)
T 2cy7_A           32 LGRKYSIFTEKDEILSDVASRLWFTYRKNF   61 (396)
T ss_dssp             TTEEECTTTCHHHHHHHHHHSBCCCEEESC
T ss_pred             ECCCCCCCCCHHHHHHHHHHEEEEECCCCC
T ss_conf             231004755699999986650998745898


No 2  
>1szh_A HER-1 protein; extended 3-10 helix, LEFT-handed anti-parallel 4-helix bundle, overhand 3-helix bundle, signaling protein; 1.50A {Caenorhabditis elegans} SCOP: a.226.1.1
Probab=4.61  E-value=2.3e+02  Score=12.86  Aligned_cols=14  Identities=43%  Similarity=0.933  Sum_probs=11.7

Q ss_pred             EEHHHHHHHHHHHH
Q ss_conf             12112744310210
Q 537021.9.peg.3   24 YQLNLIDELCCLVL   37 (52)
Q Consensus        24 yqlnlidelcclvl   37 (52)
                      -.+||-|..||-|.
T Consensus        66 k~~NLdDsVCC~VF   79 (161)
T 1szh_A           66 KKINLDDSVCCSVF   79 (161)
T ss_dssp             GCCCGGGGGGGGGG
T ss_pred             CCCCCCCCEEEHHC
T ss_conf             23689865211001


No 3  
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=4.60  E-value=86  Score=14.86  Aligned_cols=21  Identities=43%  Similarity=0.670  Sum_probs=15.5

Q ss_pred             HHHHHHHHEEEEEEEEECCCC
Q ss_conf             443102105027426605644
Q 537021.9.peg.3   30 DELCCLVLYGEKFFVSYGNAG   50 (52)
Q Consensus        30 delcclvlygekffvsygnag   50 (52)
                      +.+|||+--||.---.-|||.
T Consensus         4 ~qiCCL~ddgeRC~r~AgnAs   24 (71)
T 2kdp_A            4 GQLCCLREDGERCGRAAGNAS   24 (71)
T ss_dssp             SSBCCEEETTBCCCSBCCSCC
T ss_pred             CCEEEEEECCCHHCCCCCCCC
T ss_conf             757899627303318668813


No 4  
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=4.38  E-value=1.3e+02  Score=13.98  Aligned_cols=12  Identities=42%  Similarity=0.905  Sum_probs=9.4

Q ss_pred             HHHHHHEEHHHH
Q ss_conf             230122121127
Q 537021.9.peg.3   18 SKVWFYYQLNLI   29 (52)
Q Consensus        18 skvwfyyqlnli   29 (52)
                      .|.|+|-||+-.
T Consensus        29 eK~wYyaQLq~L   40 (125)
T 1m5i_A           29 EKDWYYAQLQNL   40 (125)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999989


No 5  
>3ech_C 25-MER fragent of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=3.98  E-value=1.1e+02  Score=14.28  Aligned_cols=11  Identities=45%  Similarity=0.902  Sum_probs=6.9

Q ss_pred             HHHHHEEEEEE
Q ss_conf             10210502742
Q 537021.9.peg.3   33 CCLVLYGEKFF   43 (52)
Q Consensus        33 cclvlygekff   43 (52)
                      -..-||||.|+
T Consensus        15 nawdlygehfy   25 (26)
T 3ech_C           15 NAWDLYGEHFY   25 (26)
T ss_dssp             THHHHHHSCCC
T ss_pred             HHHHHHHHHCC
T ss_conf             08987252314


No 6  
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol protease, transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=3.00  E-value=1.7e+02  Score=13.49  Aligned_cols=26  Identities=19%  Similarity=0.570  Sum_probs=14.2

Q ss_pred             CCCCCCC----CEEHHEHHHHHHHHEEHHH
Q ss_conf             1220147----4021031223012212112
Q 537021.9.peg.3    3 LGARFKS----GAVIVHFFSKVWFYYQLNL   28 (52)
Q Consensus         3 lgarfks----gavivhffskvwfyyqlnl   28 (52)
                      ||-.|+.    .+..-.|.|++||-|.-|.
T Consensus        28 LG~~y~~~~~~~~fl~d~~S~iwfTYR~~F   57 (355)
T 2p82_A           28 LGKQHLLKTEKSKLLSDISARLWFTYRRKF   57 (355)
T ss_dssp             TTEEEETTTTHHHHHHHHHTSBCCCEEESS
T ss_pred             ECEEECCCCCHHHHHHHHHHEEEEECCCCC
T ss_conf             441424775699999976651897714798


No 7  
>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter pylori}
Probab=3.00  E-value=1.9e+02  Score=13.20  Aligned_cols=27  Identities=41%  Similarity=0.831  Sum_probs=20.4

Q ss_pred             CCCCCCCE--EHHEHHHHHHHHEEHHHHH
Q ss_conf             22014740--2103122301221211274
Q 537021.9.peg.3    4 GARFKSGA--VIVHFFSKVWFYYQLNLID   30 (52)
Q Consensus         4 garfksga--vivhffskvwfyyqlnlid   30 (52)
                      |.+||||.  ||-.|+-.-|-|+.-.-|.
T Consensus       204 gvkFK~G~KlVIde~y~aPWNYFDARni~  232 (457)
T 2qv3_A          204 GVKFKSGEKLVIDEFYYSPWNYFDARNIK  232 (457)
T ss_dssp             CEEEEEEEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEECCCCEEEECCCCCCCCHHCCCCCCC
T ss_conf             50433675135523004872010224664


No 8  
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
Probab=2.41  E-value=2.9e+02  Score=12.37  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=19.7

Q ss_pred             CCCCCEEHHEHHHH--HHHHEEHHHHHHHHHHHHEEEEEEEEECCCC
Q ss_conf             01474021031223--0122121127443102105027426605644
Q 537021.9.peg.3    6 RFKSGAVIVHFFSK--VWFYYQLNLIDELCCLVLYGEKFFVSYGNAG   50 (52)
Q Consensus         6 rfksgavivhffsk--vwfyyqlnlidelcclvlygekffvsygnag   50 (52)
                      ++|-|....--||.  -|.--...-|++-..   .-+-+|+.|||..
T Consensus         3 ~wkvG~~C~A~~~~D~~wYRA~I~~i~~~~~---~~~V~fvDYGn~e   46 (59)
T 1mhn_A            3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRE---TCVVVYTGYGNRE   46 (59)
T ss_dssp             CCCTTCEEEEECTTTSCEEEEEEEEEETTTT---EEEEEETTTTEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEECCCCC---EEEEEEECCCCEE
T ss_conf             6875999999998789898899999718899---9999996489989


No 9  
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} SCOP: d.218.1.12
Probab=2.33  E-value=2.9e+02  Score=12.38  Aligned_cols=10  Identities=40%  Similarity=0.707  Sum_probs=0.0

Q ss_pred             CEEHHEHHHH
Q ss_conf             4021031223
Q 537021.9.peg.3   10 GAVIVHFFSK   19 (52)
Q Consensus        10 gavivhffsk   19 (52)
                      |.++||.|++
T Consensus        83 gdivVHif~~   92 (130)
T 2id1_A           83 GDVVVHVMLP   92 (130)
T ss_dssp             TTEEEEEECH
T ss_pred             CCEEEECCCH
T ss_conf             8489982898


No 10 
>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1mja_A* 1mjb_A* 1mj9_A*
Probab=2.19  E-value=3.1e+02  Score=12.24  Aligned_cols=12  Identities=42%  Similarity=0.700  Sum_probs=0.0

Q ss_pred             CCCEEHHEHHHH
Q ss_conf             474021031223
Q 537021.9.peg.3    8 KSGAVIVHFFSK   19 (52)
Q Consensus         8 ksgavivhffsk   19 (52)
                      ..|..+|-||||
T Consensus       124 ~~g~h~vGYFSK  135 (278)
T 1fy7_A          124 ELGHHLVGYFSK  135 (278)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCCEEEEEEEE
T ss_conf             998568888655


Done!