Query         537021.9.peg.363_1
Match_columns 79
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Tue May 24 18:53:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_363.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2kbz_A GP15, 15 protein (bact  14.9      34   0.001   16.4  -0.3   25    7-31     62-86  (99)
  2 >2zci_A Phosphoenolpyruvate ca  13.4 1.1E+02  0.0033   13.9   2.2   33    2-34     80-115 (294)
  3 >2faf_A Phosphoenolpyruvate ca  10.7 1.4E+02  0.0041   13.4   1.9   33    3-35     82-117 (291)
  4 >1v43_A Sugar-binding transpor  10.3   1E+02   0.003   14.1   0.9   40    5-46      3-52  (68)
  5 >1qex_A Protein (bacteriophage   9.2 1.3E+02  0.0037   13.6   1.1   43   13-55      2-49  (117)
  6 >3bbn_E Ribosomal protein S5;    7.8      97  0.0029   14.2   0.0   56   19-74     20-75  (220)
  7 >1dce_A Protein (RAB geranylge   7.3 1.2E+02  0.0035   13.7   0.3   13   16-28     14-26  (110)
  8 >3dtb_A Phosphoenolpyruvate ca   5.5 2.5E+02  0.0074   12.2   1.7   33    3-35     82-117 (291)
  9 >2ysa_A Retinoblastoma-binding   4.9   2E+02   0.006   12.6   0.3   27   10-43     25-51  (55)
 10 >1ngm_B Transcription factor I   4.8 2.3E+02  0.0068   12.3   0.5   13    6-18      2-14  (72)

No 1  
>>2kbz_A GP15, 15 protein (bacteriophage SPP1 complete nucleotide sequence); three alpha-helix bundle, viral protein; NMR {Bacillus phage SPP1} (A:)
Probab=14.91  E-value=34  Score=16.37  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCEE
Q ss_conf             4735568663025861587312102
Q 537021.9.peg.3    7 IRPSNLSPTSTTTVSFSRPTTIPLV   31 (79)
Q Consensus         7 irpsnlsptstttvsfsrpttiplv   31 (79)
                      -+++|++--|-.|||+.--|.||--
T Consensus        62 ~~~~NissRsMgtVSYTy~T~iP~~   86 (99)
T 2kbz_A           62 MTNAGLTGRSMDTVSYNFATEIPST   86 (99)
T ss_dssp             HHHHTTSCSSCSSSSCCTTTCSCTT
T ss_pred             CCCCCCCCCCCCCEEEEECCCCHHH
T ss_conf             8867856451452567722567199


No 2  
>>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} (A:227-313,A:404-610)
Probab=13.43  E-value=1.1e+02  Score=13.88  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCCCCCCCCC---CCCCCEEEEEECCCCCCCEEEEE
Q ss_conf             7423647355---68663025861587312102330
Q 537021.9.peg.3    2 NSLRGIRPSN---LSPTSTTTVSFSRPTTIPLVTQF   34 (79)
Q Consensus         2 nslrgirpsn---lsptstttvsfsrpttiplvtqf   34 (79)
                      ..||+|.|-+   =-|.|.-...=-|++|+|||.|-
T Consensus        80 dglrAiNPwedP~GVpi~aiiFGGRr~~t~PlV~ea  115 (294)
T 2zci_A           80 DGLYAVNPFNDWEGVKIDAILFGGRRADTVPLVTQT  115 (294)
T ss_dssp             SSEEEECCGGCTTCEECSEEEEECCCSSSSCSEEEC
T ss_pred             CCCEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEE
T ss_conf             984675465466788722899705777787852860


No 3  
>>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* (A:227-314,A:406-608)
Probab=10.72  E-value=1.4e+02  Score=13.43  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             CCCCCCCC-C--CCCCCEEEEEECCCCCCCEEEEEC
Q ss_conf             42364735-5--686630258615873121023303
Q 537021.9.peg.3    3 SLRGIRPS-N--LSPTSTTTVSFSRPTTIPLVTQFS   35 (79)
Q Consensus         3 slrgirps-n--lsptstttvsfsrpttiplvtqfs   35 (79)
                      .||+|.|- +  =-|.|.-...=-|++|+|||.|--
T Consensus        82 ~l~aiNPwedP~GVpi~aiiFGGRr~~t~PlV~ea~  117 (291)
T 2faf_A           82 RLRAINPWDDPEGVPIDAIIFGGRRPRGVPLVVEAF  117 (291)
T ss_dssp             BEEEECCTTCTTCEEEEEEEEEECCSSSSCSEEECS
T ss_pred             CEEEECCHCCCCCCEEEEEEECCCCCCCCCEEEEEC
T ss_conf             436625612888846888997675688887069840


No 4  
>>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} (A:291-358)
Probab=10.33  E-value=1e+02  Score=14.09  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=22.5

Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCE----------EEEECCCEEEEEECCC
Q ss_conf             36473556866302586158731210----------2330341333432010
Q 537021.9.peg.3    5 RGIRPSNLSPTSTTTVSFSRPTTIPL----------VTQFSARSFLVKLSSR   46 (79)
Q Consensus         5 rgirpsnlsptstttvsfsrpttipl----------vtqfsarsflvklssr   46 (79)
                      -||||..+++.+.....+.-  ++-+          ..++....|.++++..
T Consensus         3 lGIRPE~i~~~~~~~~~l~~--~V~~vE~lG~et~i~~~~~g~~~~~~~~~~   52 (68)
T 1v43_A            3 MTVEGVSELAHMKRTARLIG--KVDFVEALGTDTILHVKFGDELVKVKLPGH   52 (68)
T ss_dssp             EEESCC----CCSSEEEEEE--EEEEEEECSSEEEEEEEETTEEEEEEEESC
T ss_pred             CEECCCCCCCCCCCCCEEEE--EEEEEEEECCEEEEEEEECCEEEEEEECCC
T ss_conf             09867775555675535999--999999969939999998998999998999


No 5  
>>1qex_A Protein (bacteriophage T4 gene product 9 (GP9)); baseplate, oligomerization, X-RAY crystallography, viral protein; HET: EPE; 2.30A {Enterobacteria phage T4} (A:172-288)
Probab=9.24  E-value=1.3e+02  Score=13.61  Aligned_cols=43  Identities=30%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             CCCCEEE-EEECCCCCCCEE--EEECCCEEEEEEC--CCHHHHHHCCC
Q ss_conf             8663025-861587312102--3303413334320--10221110024
Q 537021.9.peg.3   13 SPTSTTT-VSFSRPTTIPLV--TQFSARSFLVKLS--SRRVAKSSRDG   55 (79)
Q Consensus        13 sptsttt-vsfsrpttiplv--tqfsarsflvkls--srrvakssrdg   55 (79)
                      +|-.+|- ++-+-|+.|||.  ++|++--.||--.  ..++-|++.--
T Consensus         2 ~Pvd~T~nI~~s~~~~Iplf~~~eY~~~KLLV~a~N~~Gtv~K~sE~l   49 (117)
T 1qex_A            2 SPAEGTWNISTSGSVDIPLFHRTEYNMAKLLVTCQSVDGRKIKTAEIN   49 (117)
T ss_dssp             CSCEEEEECCTTSEEEEEEEETTTCSEEEEEEEEEETTSSCEEEEEEE
T ss_pred             CCCCCEEEEEECCEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEEEE
T ss_conf             431326998503404677505555110057899733787034311302


No 6  
>>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:1-220)
Probab=7.84  E-value=97  Score=14.17  Aligned_cols=56  Identities=21%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             EEEECCCCCCCEEEEECCCEEEEEECCCHHHHHHCCCCHHHCCCCCHHHHCCCCCC
Q ss_conf             58615873121023303413334320102211100240010578622320186200
Q 537021.9.peg.3   19 TVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDINTPDKQQTKNPITS   74 (79)
Q Consensus        19 tvsfsrpttiplvtqfsarsflvklssrrvakssrdglvkdintpdkqqtknpits   74 (79)
                      +..|.-....|...|....+|.-|+.+.+.+...+.+.-+.-..-+.+.--||..+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~s~f~kl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~   75 (220)
T 3bbn_E           20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEE   75 (220)
T ss_dssp             --------------------------------------------------------
T ss_pred             CCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCEECCCCCCCCEECCCCCCHHH
T ss_conf             65567751001111057754026620356778742211355521212578994332


No 7  
>>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:242-351)
Probab=7.34  E-value=1.2e+02  Score=13.74  Aligned_cols=13  Identities=46%  Similarity=0.772  Sum_probs=9.0

Q ss_pred             CEEEEEECCCCCC
Q ss_conf             3025861587312
Q 537021.9.peg.3   16 STTTVSFSRPTTI   28 (79)
Q Consensus        16 stttvsfsrptti   28 (79)
                      .--+|+||||-..
T Consensus        14 ~cltv~FSrpv~v   26 (110)
T 1dce_A           14 ACLSVCFSRPLTV   26 (110)
T ss_dssp             TEEEEEEEEEECT
T ss_pred             CEEEEEECCCCCC
T ss_conf             5046762466554


No 8  
>>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP]; gluconeogenesis, lyase, cytoplasm, decarboxylase, GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A* 2gmv_A* (A:243-330,A:422-624)
Probab=5.48  E-value=2.5e+02  Score=12.16  Aligned_cols=33  Identities=30%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             CCCCCCCC-C--CCCCCEEEEEECCCCCCCEEEEEC
Q ss_conf             42364735-5--686630258615873121023303
Q 537021.9.peg.3    3 SLRGIRPS-N--LSPTSTTTVSFSRPTTIPLVTQFS   35 (79)
Q Consensus         3 slrgirps-n--lsptstttvsfsrpttiplvtqfs   35 (79)
                      .||.|.|- +  =-|.|.-...=-|++|+|||.|--
T Consensus        82 ~l~AiNPwedP~GVpi~aiiFGGRr~~t~PlV~ea~  117 (291)
T 3dtb_A           82 NLRAINPWESPEGVPIEGIIFGGRRPAGVPLVYEAL  117 (291)
T ss_dssp             CEEEECCTTCTTCEEEEEEEEECCCSSSCCSEEECS
T ss_pred             CEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHC
T ss_conf             778643633778876148998157766788877843


No 9  
>>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=4.94  E-value=2e+02  Score=12.62  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=14.3

Q ss_pred             CCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEE
Q ss_conf             5568663025861587312102330341333432
Q 537021.9.peg.3   10 SNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKL   43 (79)
Q Consensus        10 snlsptstttvsfsrpttiplvtqfsarsflvkl   43 (79)
                      .|-.|.....-.+.|+|-||       ||||...
T Consensus        25 tn~d~~~~~~~rik~~TGIP-------rsfl~~v   51 (55)
T 2ysa_A           25 TNGDKNFESGPRIKKSTGIP-------RSFMMEV   51 (55)
T ss_dssp             GGGCSSCCCSSCSCCCSSCS-------CSSSCCC
T ss_pred             CCCCCCCCCCCEECCCCCCC-------HHHHCCC
T ss_conf             99896656554120488679-------8980147


No 10 
>>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} (B:)
Probab=4.78  E-value=2.3e+02  Score=12.34  Aligned_cols=13  Identities=38%  Similarity=0.368  Sum_probs=9.1

Q ss_pred             CCCCCCCCCCCEE
Q ss_conf             6473556866302
Q 537021.9.peg.3    6 GIRPSNLSPTSTT   18 (79)
Q Consensus         6 girpsnlsptstt   18 (79)
                      +-||+||++-.|+
T Consensus         2 ~~rp~~l~~lPtt   14 (72)
T 1ngm_B            2 SYCPRNLHLLPTT   14 (72)
T ss_dssp             CSSCCCGGGSCCH
T ss_pred             CCCCCCCCCCCCC
T ss_conf             9888887768872


Done!