Query 537021.9.peg.363_1 Match_columns 79 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 18:53:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_363.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2kbz_A GP15, 15 protein (bact 14.9 34 0.001 16.4 -0.3 25 7-31 62-86 (99) 2 >2zci_A Phosphoenolpyruvate ca 13.4 1.1E+02 0.0033 13.9 2.2 33 2-34 80-115 (294) 3 >2faf_A Phosphoenolpyruvate ca 10.7 1.4E+02 0.0041 13.4 1.9 33 3-35 82-117 (291) 4 >1v43_A Sugar-binding transpor 10.3 1E+02 0.003 14.1 0.9 40 5-46 3-52 (68) 5 >1qex_A Protein (bacteriophage 9.2 1.3E+02 0.0037 13.6 1.1 43 13-55 2-49 (117) 6 >3bbn_E Ribosomal protein S5; 7.8 97 0.0029 14.2 0.0 56 19-74 20-75 (220) 7 >1dce_A Protein (RAB geranylge 7.3 1.2E+02 0.0035 13.7 0.3 13 16-28 14-26 (110) 8 >3dtb_A Phosphoenolpyruvate ca 5.5 2.5E+02 0.0074 12.2 1.7 33 3-35 82-117 (291) 9 >2ysa_A Retinoblastoma-binding 4.9 2E+02 0.006 12.6 0.3 27 10-43 25-51 (55) 10 >1ngm_B Transcription factor I 4.8 2.3E+02 0.0068 12.3 0.5 13 6-18 2-14 (72) No 1 >>2kbz_A GP15, 15 protein (bacteriophage SPP1 complete nucleotide sequence); three alpha-helix bundle, viral protein; NMR {Bacillus phage SPP1} (A:) Probab=14.91 E-value=34 Score=16.37 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.4 Q ss_pred CCCCCCCCCCEEEEEECCCCCCCEE Q ss_conf 4735568663025861587312102 Q 537021.9.peg.3 7 IRPSNLSPTSTTTVSFSRPTTIPLV 31 (79) Q Consensus 7 irpsnlsptstttvsfsrpttiplv 31 (79) -+++|++--|-.|||+.--|.||-- T Consensus 62 ~~~~NissRsMgtVSYTy~T~iP~~ 86 (99) T 2kbz_A 62 MTNAGLTGRSMDTVSYNFATEIPST 86 (99) T ss_dssp HHHHTTSCSSCSSSSCCTTTCSCTT T ss_pred CCCCCCCCCCCCCEEEEECCCCHHH T ss_conf 8867856451452567722567199 No 2 >>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} (A:227-313,A:404-610) Probab=13.43 E-value=1.1e+02 Score=13.88 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=22.8 Q ss_pred CCCCCCCCCC---CCCCCEEEEEECCCCCCCEEEEE Q ss_conf 7423647355---68663025861587312102330 Q 537021.9.peg.3 2 NSLRGIRPSN---LSPTSTTTVSFSRPTTIPLVTQF 34 (79) Q Consensus 2 nslrgirpsn---lsptstttvsfsrpttiplvtqf 34 (79) ..||+|.|-+ =-|.|.-...=-|++|+|||.|- T Consensus 80 dglrAiNPwedP~GVpi~aiiFGGRr~~t~PlV~ea 115 (294) T 2zci_A 80 DGLYAVNPFNDWEGVKIDAILFGGRRADTVPLVTQT 115 (294) T ss_dssp SSEEEECCGGCTTCEECSEEEEECCCSSSSCSEEEC T ss_pred CCCEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEE T ss_conf 984675465466788722899705777787852860 No 3 >>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* (A:227-314,A:406-608) Probab=10.72 E-value=1.4e+02 Score=13.43 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=22.3 Q ss_pred CCCCCCCC-C--CCCCCEEEEEECCCCCCCEEEEEC Q ss_conf 42364735-5--686630258615873121023303 Q 537021.9.peg.3 3 SLRGIRPS-N--LSPTSTTTVSFSRPTTIPLVTQFS 35 (79) Q Consensus 3 slrgirps-n--lsptstttvsfsrpttiplvtqfs 35 (79) .||+|.|- + =-|.|.-...=-|++|+|||.|-- T Consensus 82 ~l~aiNPwedP~GVpi~aiiFGGRr~~t~PlV~ea~ 117 (291) T 2faf_A 82 RLRAINPWDDPEGVPIDAIIFGGRRPRGVPLVVEAF 117 (291) T ss_dssp BEEEECCTTCTTCEEEEEEEEEECCSSSSCSEEECS T ss_pred CEEEECCHCCCCCCEEEEEEECCCCCCCCCEEEEEC T ss_conf 436625612888846888997675688887069840 No 4 >>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} (A:291-358) Probab=10.33 E-value=1e+02 Score=14.09 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=22.5 Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCE----------EEEECCCEEEEEECCC Q ss_conf 36473556866302586158731210----------2330341333432010 Q 537021.9.peg.3 5 RGIRPSNLSPTSTTTVSFSRPTTIPL----------VTQFSARSFLVKLSSR 46 (79) Q Consensus 5 rgirpsnlsptstttvsfsrpttipl----------vtqfsarsflvklssr 46 (79) -||||..+++.+.....+.- ++-+ ..++....|.++++.. T Consensus 3 lGIRPE~i~~~~~~~~~l~~--~V~~vE~lG~et~i~~~~~g~~~~~~~~~~ 52 (68) T 1v43_A 3 MTVEGVSELAHMKRTARLIG--KVDFVEALGTDTILHVKFGDELVKVKLPGH 52 (68) T ss_dssp EEESCC----CCSSEEEEEE--EEEEEEECSSEEEEEEEETTEEEEEEEESC T ss_pred CEECCCCCCCCCCCCCEEEE--EEEEEEEECCEEEEEEEECCEEEEEEECCC T ss_conf 09867775555675535999--999999969939999998998999998999 No 5 >>1qex_A Protein (bacteriophage T4 gene product 9 (GP9)); baseplate, oligomerization, X-RAY crystallography, viral protein; HET: EPE; 2.30A {Enterobacteria phage T4} (A:172-288) Probab=9.24 E-value=1.3e+02 Score=13.61 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=27.8 Q ss_pred CCCCEEE-EEECCCCCCCEE--EEECCCEEEEEEC--CCHHHHHHCCC Q ss_conf 8663025-861587312102--3303413334320--10221110024 Q 537021.9.peg.3 13 SPTSTTT-VSFSRPTTIPLV--TQFSARSFLVKLS--SRRVAKSSRDG 55 (79) Q Consensus 13 sptsttt-vsfsrpttiplv--tqfsarsflvkls--srrvakssrdg 55 (79) +|-.+|- ++-+-|+.|||. ++|++--.||--. ..++-|++.-- T Consensus 2 ~Pvd~T~nI~~s~~~~Iplf~~~eY~~~KLLV~a~N~~Gtv~K~sE~l 49 (117) T 1qex_A 2 SPAEGTWNISTSGSVDIPLFHRTEYNMAKLLVTCQSVDGRKIKTAEIN 49 (117) T ss_dssp CSCEEEEECCTTSEEEEEEEETTTCSEEEEEEEEEETTSSCEEEEEEE T ss_pred CCCCCEEEEEECCEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEEEE T ss_conf 431326998503404677505555110057899733787034311302 No 6 >>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:1-220) Probab=7.84 E-value=97 Score=14.17 Aligned_cols=56 Identities=21% Similarity=0.135 Sum_probs=35.8 Q ss_pred EEEECCCCCCCEEEEECCCEEEEEECCCHHHHHHCCCCHHHCCCCCHHHHCCCCCC Q ss_conf 58615873121023303413334320102211100240010578622320186200 Q 537021.9.peg.3 19 TVSFSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDINTPDKQQTKNPITS 74 (79) Q Consensus 19 tvsfsrpttiplvtqfsarsflvklssrrvakssrdglvkdintpdkqqtknpits 74 (79) +..|.-....|...|....+|.-|+.+.+.+...+.+.-+.-..-+.+.--||..+ T Consensus 20 ~~~~~~~~~~~~~~~~~~~s~f~kl~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 75 (220) T 3bbn_E 20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEE 75 (220) T ss_dssp -------------------------------------------------------- T ss_pred CCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCEECCCCCCCCEECCCCCCHHH T ss_conf 65567751001111057754026620356778742211355521212578994332 No 7 >>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:242-351) Probab=7.34 E-value=1.2e+02 Score=13.74 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=9.0 Q ss_pred CEEEEEECCCCCC Q ss_conf 3025861587312 Q 537021.9.peg.3 16 STTTVSFSRPTTI 28 (79) Q Consensus 16 stttvsfsrptti 28 (79) .--+|+||||-.. T Consensus 14 ~cltv~FSrpv~v 26 (110) T 1dce_A 14 ACLSVCFSRPLTV 26 (110) T ss_dssp TEEEEEEEEEECT T ss_pred CEEEEEECCCCCC T ss_conf 5046762466554 No 8 >>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP]; gluconeogenesis, lyase, cytoplasm, decarboxylase, GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A* 2gmv_A* (A:243-330,A:422-624) Probab=5.48 E-value=2.5e+02 Score=12.16 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=22.2 Q ss_pred CCCCCCCC-C--CCCCCEEEEEECCCCCCCEEEEEC Q ss_conf 42364735-5--686630258615873121023303 Q 537021.9.peg.3 3 SLRGIRPS-N--LSPTSTTTVSFSRPTTIPLVTQFS 35 (79) Q Consensus 3 slrgirps-n--lsptstttvsfsrpttiplvtqfs 35 (79) .||.|.|- + =-|.|.-...=-|++|+|||.|-- T Consensus 82 ~l~AiNPwedP~GVpi~aiiFGGRr~~t~PlV~ea~ 117 (291) T 3dtb_A 82 NLRAINPWESPEGVPIEGIIFGGRRPAGVPLVYEAL 117 (291) T ss_dssp CEEEECCTTCTTCEEEEEEEEECCCSSSCCSEEECS T ss_pred CEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHC T ss_conf 778643633778876148998157766788877843 No 9 >>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=4.94 E-value=2e+02 Score=12.62 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=14.3 Q ss_pred CCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEE Q ss_conf 5568663025861587312102330341333432 Q 537021.9.peg.3 10 SNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKL 43 (79) Q Consensus 10 snlsptstttvsfsrpttiplvtqfsarsflvkl 43 (79) .|-.|.....-.+.|+|-|| ||||... T Consensus 25 tn~d~~~~~~~rik~~TGIP-------rsfl~~v 51 (55) T 2ysa_A 25 TNGDKNFESGPRIKKSTGIP-------RSFMMEV 51 (55) T ss_dssp GGGCSSCCCSSCSCCCSSCS-------CSSSCCC T ss_pred CCCCCCCCCCCEECCCCCCC-------HHHHCCC T ss_conf 99896656554120488679-------8980147 No 10 >>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} (B:) Probab=4.78 E-value=2.3e+02 Score=12.34 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=9.1 Q ss_pred CCCCCCCCCCCEE Q ss_conf 6473556866302 Q 537021.9.peg.3 6 GIRPSNLSPTSTT 18 (79) Q Consensus 6 girpsnlsptstt 18 (79) +-||+||++-.|+ T Consensus 2 ~~rp~~l~~lPtt 14 (72) T 1ngm_B 2 SYCPRNLHLLPTT 14 (72) T ss_dssp CSSCCCGGGSCCH T ss_pred CCCCCCCCCCCCC T ss_conf 9888887768872 Done!