Query 537021.9.peg.363_1 Match_columns 79 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 22:41:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_363.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2kbz_A GP15, 15 protein (bacte 15.7 22 0.00094 16.5 -0.3 25 7-31 62-86 (99) 2 2ysa_A Retinoblastoma-binding 6.2 1.1E+02 0.0044 13.3 0.3 28 9-43 24-51 (55) 3 3ogi_B ESXO, putative ESAT-6-l 3.5 88 0.0037 13.6 -1.7 17 50-66 73-89 (99) 4 1lmi_A Immunogenic protein MPT 3.1 2.9E+02 0.012 11.1 0.9 23 16-38 50-72 (131) 5 2ql2_A Transcription factor E2 2.5 2.1E+02 0.0087 11.8 -0.8 27 46-72 1-42 (60) 6 2waw_A MOBA relate protein; un 2.2 1.3E+02 0.0054 12.9 -2.2 14 54-67 176-189 (199) 7 1j6q_A Cytochrome C maturation 2.2 3.8E+02 0.016 10.5 0.5 54 5-64 72-127 (136) 8 1es6_A Matrix protein VP40; be 2.0 3.4E+02 0.014 10.8 -0.2 20 49-68 190-209 (296) 9 3d5n_A Q97W15_sulso; NESG, SSR 1.8 4.4E+02 0.019 10.2 0.7 14 53-66 168-181 (197) 10 2a41_C Wiskott-aldrich syndrom 1.6 3.7E+02 0.016 10.6 -0.6 29 51-79 3-31 (32) No 1 >2kbz_A GP15, 15 protein (bacteriophage SPP1 complete nucleotide sequence); three alpha-helix bundle, viral protein; NMR {Bacillus phage SPP1} Probab=15.73 E-value=22 Score=16.54 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.1 Q ss_pred CCCCCCCCCCEEEEEECCCCCCCEE Q ss_conf 4735568663025861587312102 Q 537021.9.peg.3 7 IRPSNLSPTSTTTVSFSRPTTIPLV 31 (79) Q Consensus 7 irpsnlsptstttvsfsrpttiplv 31 (79) -+++|++--|-.|||+.--|.||-- T Consensus 62 ~~~~NissRsMgtVSYTy~T~iP~~ 86 (99) T 2kbz_A 62 MTNAGLTGRSMDTVSYNFATEIPST 86 (99) T ss_dssp HHHHTTSCSSCSSSSCCTTTCSCTT T ss_pred CCCCCCCCCCCCCEEEEECCCCHHH T ss_conf 8867766451452567722566199 No 2 >2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=6.25 E-value=1.1e+02 Score=13.26 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=14.6 Q ss_pred CCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEE Q ss_conf 35568663025861587312102330341333432 Q 537021.9.peg.3 9 PSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKL 43 (79) Q Consensus 9 psnlsptstttvsfsrpttiplvtqfsarsflvkl 43 (79) |.|-.|.-...-.+.|+|-|| ||||+.. T Consensus 24 Ptn~d~~~~~~~rik~~TGIP-------rsfL~~v 51 (55) T 2ysa_A 24 PTNGDKNFESGPRIKKSTGIP-------RSFMMEV 51 (55) T ss_dssp SGGGCSSCCCSSCSCCCSSCS-------CSSSCCC T ss_pred CCCCCCCCCCCCEECCCCCCC-------HHHHCCC T ss_conf 888897656554012378689-------8982337 No 3 >3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} Probab=3.49 E-value=88 Score=13.65 Aligned_cols=17 Identities=47% Similarity=0.747 Sum_probs=13.3 Q ss_pred HHHCCCCHHHCCCCCHH Q ss_conf 11002400105786223 Q 537021.9.peg.3 50 KSSRDGLVKDINTPDKQ 66 (79) Q Consensus 50 kssrdglvkdintpdkq 66 (79) ..-||||+.|-|.-..| T Consensus 73 ~~vrdgl~rdan~ye~q 89 (99) T 3ogi_B 73 HGVRDGLVRDANNYEQQ 89 (99) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHH T ss_conf 87677664322007889 No 4 >1lmi_A Immunogenic protein MPT63/MPB63; beta-sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: b.1.19.1 Probab=3.08 E-value=2.9e+02 Score=11.14 Aligned_cols=23 Identities=43% Similarity=0.600 Sum_probs=18.8 Q ss_pred CEEEEEECCCCCCCEEEEECCCE Q ss_conf 30258615873121023303413 Q 537021.9.peg.3 16 STTTVSFSRPTTIPLVTQFSARS 38 (79) Q Consensus 16 stttvsfsrpttiplvtqfsars 38 (79) .+.|+.--+-+-.|++.+|.||. T Consensus 50 AtaT~~av~G~VTP~isnfnAra 72 (131) T 1lmi_A 50 ATATVNAIRGSVTPAVSQFNART 72 (131) T ss_dssp EEEEEEEEESCBCCCGGGEEEEC T ss_pred EEEEEEEECCCCCCCCCCCCEEC T ss_conf 68887752341022303411133 No 5 >2ql2_A Transcription factor E2-alpha; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Probab=2.47 E-value=2.1e+02 Score=11.84 Aligned_cols=27 Identities=52% Similarity=0.717 Sum_probs=13.6 Q ss_pred CHHHHHHCCCC-HHHCCC--------------CCHHHHCCCC Q ss_conf 02211100240-010578--------------6223201862 Q 537021.9.peg.3 46 RRVAKSSRDGL-VKDINT--------------PDKQQTKNPI 72 (79) Q Consensus 46 rrvakssrdgl-vkdint--------------pdkqqtknpi 72 (79) ||.|...|.-+ |+|||. .||.|||--| T Consensus 1 RR~aNNaRERiRVrDINeAfkELGrMc~~Hl~~dk~QtKL~i 42 (60) T 2ql2_A 1 RRMANNARERVRVRDINEAFRELGRMCQLHLKSDKAQTKLLI 42 (60) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCCHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 953201677676655899999999999998057662169999 No 6 >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Probab=2.18 E-value=1.3e+02 Score=12.85 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=9.1 Q ss_pred CCCHHHCCCCCHHH Q ss_conf 24001057862232 Q 537021.9.peg.3 54 DGLVKDINTPDKQQ 67 (79) Q Consensus 54 dglvkdintpdkqq 67 (79) .+...|||||+.-+ T Consensus 176 ~~~~~didTpeDl~ 189 (199) T 2waw_A 176 ADVPLDVDTWDDYE 189 (199) T ss_dssp SCCCCCCSSHHHHH T ss_pred CCCCCCCCCHHHHH T ss_conf 88114899999999 No 7 >1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A Probab=2.17 E-value=3.8e+02 Score=10.54 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=30.9 Q ss_pred CCCCCCCCCCCCEEEEE--ECCCCCCCEEEEECCCEEEEEECCCHHHHHHCCCCHHHCCCCC Q ss_conf 36473556866302586--1587312102330341333432010221110024001057862 Q 537021.9.peg.3 5 RGIRPSNLSPTSTTTVS--FSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDINTPD 64 (79) Q Consensus 5 rgirpsnlsptstttvs--fsrpttiplvtqfsarsflvklssrrvakssrdglvkdintpd 64 (79) .|+.|.++..-..-.|. |... .-|.|...|+|-.|+-......+.+-+.-...+ T Consensus 72 ~G~lPdlF~eg~~VVveG~~~~~------g~F~A~~llaKc~skY~p~e~~~~~~~~~~~~~ 127 (136) T 1j6q_A 72 DDLLPDLFREGQGIVAQGVLGED------GKLAATEVLAKHDENYMPPEVAEAMGQKHEKLD 127 (136) T ss_dssp CSCCTTSCCSSSEEEEEEEECST------TSEEEEEEECCC--------------------- T ss_pred CCCCCHHHCCCCCEEEEEEECCC------CEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCC T ss_conf 47794110379849999998889------869998998579987799779999986245667 No 8 >1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} SCOP: b.31.1.1 b.31.1.1 PDB: 1h2d_A Probab=2.02 E-value=3.4e+02 Score=10.77 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.0 Q ss_pred HHHHCCCCHHHCCCCCHHHH Q ss_conf 11100240010578622320 Q 537021.9.peg.3 49 AKSSRDGLVKDINTPDKQQT 68 (79) Q Consensus 49 akssrdglvkdintpdkqqt 68 (79) .|+...|-+.|...|||-|+ T Consensus 190 ~k~gkkg~~sdltspdkiq~ 209 (296) T 1es6_A 190 NKSGKKGNSADLTSPEKIQA 209 (296) T ss_dssp CC-----CHHHHSCHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHH T ss_conf 75677765234678789999 No 9 >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Probab=1.79 E-value=4.4e+02 Score=10.20 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.9 Q ss_pred CCCCHHHCCCCCHH Q ss_conf 02400105786223 Q 537021.9.peg.3 53 RDGLVKDINTPDKQ 66 (79) Q Consensus 53 rdglvkdintpdkq 66 (79) .++...|||||+.- T Consensus 168 ~~~~~~dInTpeDl 181 (197) T 3d5n_A 168 SEGVLIDIDKKEDL 181 (197) T ss_dssp CGGGTCCTTTC--- T ss_pred CCCCEECCCCHHHH T ss_conf 98836689999999 No 10 >2a41_C Wiskott-aldrich syndrome protein interacting protein; WIP, WH2, WAsp, DNAse I, ARP2/3, structural protein; HET: HIC NAG BMA ATP; 2.60A {Bos taurus} Probab=1.58 E-value=3.7e+02 Score=10.59 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=0.0 Q ss_pred HHCCCCHHHCCCCCHHHHCCCCCCCCCCC Q ss_conf 10024001057862232018620046459 Q 537021.9.peg.3 51 SSRDGLVKDINTPDKQQTKNPITSSVPII 79 (79) Q Consensus 51 ssrdglvkdintpdkqqtknpitssvpii 79 (79) ..|..|..||..-.+-...-.-.-|.|++ T Consensus 3 ~gr~allsdi~kg~~lkk~vtndrsap~~ 31 (32) T 2a41_C 3 AGRNALLSDISKGKKLKKTVTNDRSAPIL 31 (32) T ss_dssp TTHHHHHHHHHHCCCCBCCCCEECCSCCC T ss_pred CCCHHHHHHHHHCHHHHHHHCCCCCCCCC T ss_conf 44201777654011455554167767675 Done!