Query         537021.9.peg.363_1
Match_columns 79
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 22:41:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_363.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2kbz_A GP15, 15 protein (bacte  15.7      22 0.00094   16.5  -0.3   25    7-31     62-86  (99)
  2 2ysa_A Retinoblastoma-binding    6.2 1.1E+02  0.0044   13.3   0.3   28    9-43     24-51  (55)
  3 3ogi_B ESXO, putative ESAT-6-l   3.5      88  0.0037   13.6  -1.7   17   50-66     73-89  (99)
  4 1lmi_A Immunogenic protein MPT   3.1 2.9E+02   0.012   11.1   0.9   23   16-38     50-72  (131)
  5 2ql2_A Transcription factor E2   2.5 2.1E+02  0.0087   11.8  -0.8   27   46-72      1-42  (60)
  6 2waw_A MOBA relate protein; un   2.2 1.3E+02  0.0054   12.9  -2.2   14   54-67    176-189 (199)
  7 1j6q_A Cytochrome C maturation   2.2 3.8E+02   0.016   10.5   0.5   54    5-64     72-127 (136)
  8 1es6_A Matrix protein VP40; be   2.0 3.4E+02   0.014   10.8  -0.2   20   49-68    190-209 (296)
  9 3d5n_A Q97W15_sulso; NESG, SSR   1.8 4.4E+02   0.019   10.2   0.7   14   53-66    168-181 (197)
 10 2a41_C Wiskott-aldrich syndrom   1.6 3.7E+02   0.016   10.6  -0.6   29   51-79      3-31  (32)

No 1  
>2kbz_A GP15, 15 protein (bacteriophage SPP1 complete nucleotide sequence); three alpha-helix bundle, viral protein; NMR {Bacillus phage SPP1}
Probab=15.73  E-value=22  Score=16.54  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCEE
Q ss_conf             4735568663025861587312102
Q 537021.9.peg.3    7 IRPSNLSPTSTTTVSFSRPTTIPLV   31 (79)
Q Consensus         7 irpsnlsptstttvsfsrpttiplv   31 (79)
                      -+++|++--|-.|||+.--|.||--
T Consensus        62 ~~~~NissRsMgtVSYTy~T~iP~~   86 (99)
T 2kbz_A           62 MTNAGLTGRSMDTVSYNFATEIPST   86 (99)
T ss_dssp             HHHHTTSCSSCSSSSCCTTTCSCTT
T ss_pred             CCCCCCCCCCCCCEEEEECCCCHHH
T ss_conf             8867766451452567722566199


No 2  
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=6.25  E-value=1.1e+02  Score=13.26  Aligned_cols=28  Identities=29%  Similarity=0.511  Sum_probs=14.6

Q ss_pred             CCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEE
Q ss_conf             35568663025861587312102330341333432
Q 537021.9.peg.3    9 PSNLSPTSTTTVSFSRPTTIPLVTQFSARSFLVKL   43 (79)
Q Consensus         9 psnlsptstttvsfsrpttiplvtqfsarsflvkl   43 (79)
                      |.|-.|.-...-.+.|+|-||       ||||+..
T Consensus        24 Ptn~d~~~~~~~rik~~TGIP-------rsfL~~v   51 (55)
T 2ysa_A           24 PTNGDKNFESGPRIKKSTGIP-------RSFMMEV   51 (55)
T ss_dssp             SGGGCSSCCCSSCSCCCSSCS-------CSSSCCC
T ss_pred             CCCCCCCCCCCCEECCCCCCC-------HHHHCCC
T ss_conf             888897656554012378689-------8982337


No 3  
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis}
Probab=3.49  E-value=88  Score=13.65  Aligned_cols=17  Identities=47%  Similarity=0.747  Sum_probs=13.3

Q ss_pred             HHHCCCCHHHCCCCCHH
Q ss_conf             11002400105786223
Q 537021.9.peg.3   50 KSSRDGLVKDINTPDKQ   66 (79)
Q Consensus        50 kssrdglvkdintpdkq   66 (79)
                      ..-||||+.|-|.-..|
T Consensus        73 ~~vrdgl~rdan~ye~q   89 (99)
T 3ogi_B           73 HGVRDGLVRDANNYEQQ   89 (99)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHH
T ss_conf             87677664322007889


No 4  
>1lmi_A Immunogenic protein MPT63/MPB63; beta-sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: b.1.19.1
Probab=3.08  E-value=2.9e+02  Score=11.14  Aligned_cols=23  Identities=43%  Similarity=0.600  Sum_probs=18.8

Q ss_pred             CEEEEEECCCCCCCEEEEECCCE
Q ss_conf             30258615873121023303413
Q 537021.9.peg.3   16 STTTVSFSRPTTIPLVTQFSARS   38 (79)
Q Consensus        16 stttvsfsrpttiplvtqfsars   38 (79)
                      .+.|+.--+-+-.|++.+|.||.
T Consensus        50 AtaT~~av~G~VTP~isnfnAra   72 (131)
T 1lmi_A           50 ATATVNAIRGSVTPAVSQFNART   72 (131)
T ss_dssp             EEEEEEEEESCBCCCGGGEEEEC
T ss_pred             EEEEEEEECCCCCCCCCCCCEEC
T ss_conf             68887752341022303411133


No 5  
>2ql2_A Transcription factor E2-alpha; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=2.47  E-value=2.1e+02  Score=11.84  Aligned_cols=27  Identities=52%  Similarity=0.717  Sum_probs=13.6

Q ss_pred             CHHHHHHCCCC-HHHCCC--------------CCHHHHCCCC
Q ss_conf             02211100240-010578--------------6223201862
Q 537021.9.peg.3   46 RRVAKSSRDGL-VKDINT--------------PDKQQTKNPI   72 (79)
Q Consensus        46 rrvakssrdgl-vkdint--------------pdkqqtknpi   72 (79)
                      ||.|...|.-+ |+|||.              .||.|||--|
T Consensus         1 RR~aNNaRERiRVrDINeAfkELGrMc~~Hl~~dk~QtKL~i   42 (60)
T 2ql2_A            1 RRMANNARERVRVRDINEAFRELGRMCQLHLKSDKAQTKLLI   42 (60)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             953201677676655899999999999998057662169999


No 6  
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=2.18  E-value=1.3e+02  Score=12.85  Aligned_cols=14  Identities=21%  Similarity=0.249  Sum_probs=9.1

Q ss_pred             CCCHHHCCCCCHHH
Q ss_conf             24001057862232
Q 537021.9.peg.3   54 DGLVKDINTPDKQQ   67 (79)
Q Consensus        54 dglvkdintpdkqq   67 (79)
                      .+...|||||+.-+
T Consensus       176 ~~~~~didTpeDl~  189 (199)
T 2waw_A          176 ADVPLDVDTWDDYE  189 (199)
T ss_dssp             SCCCCCCSSHHHHH
T ss_pred             CCCCCCCCCHHHHH
T ss_conf             88114899999999


No 7  
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=2.17  E-value=3.8e+02  Score=10.54  Aligned_cols=54  Identities=9%  Similarity=0.144  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCCEEEEE--ECCCCCCCEEEEECCCEEEEEECCCHHHHHHCCCCHHHCCCCC
Q ss_conf             36473556866302586--1587312102330341333432010221110024001057862
Q 537021.9.peg.3    5 RGIRPSNLSPTSTTTVS--FSRPTTIPLVTQFSARSFLVKLSSRRVAKSSRDGLVKDINTPD   64 (79)
Q Consensus         5 rgirpsnlsptstttvs--fsrpttiplvtqfsarsflvklssrrvakssrdglvkdintpd   64 (79)
                      .|+.|.++..-..-.|.  |...      .-|.|...|+|-.|+-......+.+-+.-...+
T Consensus        72 ~G~lPdlF~eg~~VVveG~~~~~------g~F~A~~llaKc~skY~p~e~~~~~~~~~~~~~  127 (136)
T 1j6q_A           72 DDLLPDLFREGQGIVAQGVLGED------GKLAATEVLAKHDENYMPPEVAEAMGQKHEKLD  127 (136)
T ss_dssp             CSCCTTSCCSSSEEEEEEEECST------TSEEEEEEECCC---------------------
T ss_pred             CCCCCHHHCCCCCEEEEEEECCC------CEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             47794110379849999998889------869998998579987799779999986245667


No 8  
>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} SCOP: b.31.1.1 b.31.1.1 PDB: 1h2d_A
Probab=2.02  E-value=3.4e+02  Score=10.77  Aligned_cols=20  Identities=35%  Similarity=0.589  Sum_probs=16.0

Q ss_pred             HHHHCCCCHHHCCCCCHHHH
Q ss_conf             11100240010578622320
Q 537021.9.peg.3   49 AKSSRDGLVKDINTPDKQQT   68 (79)
Q Consensus        49 akssrdglvkdintpdkqqt   68 (79)
                      .|+...|-+.|...|||-|+
T Consensus       190 ~k~gkkg~~sdltspdkiq~  209 (296)
T 1es6_A          190 NKSGKKGNSADLTSPEKIQA  209 (296)
T ss_dssp             CC-----CHHHHSCHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHH
T ss_conf             75677765234678789999


No 9  
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=1.79  E-value=4.4e+02  Score=10.20  Aligned_cols=14  Identities=21%  Similarity=0.539  Sum_probs=9.9

Q ss_pred             CCCCHHHCCCCCHH
Q ss_conf             02400105786223
Q 537021.9.peg.3   53 RDGLVKDINTPDKQ   66 (79)
Q Consensus        53 rdglvkdintpdkq   66 (79)
                      .++...|||||+.-
T Consensus       168 ~~~~~~dInTpeDl  181 (197)
T 3d5n_A          168 SEGVLIDIDKKEDL  181 (197)
T ss_dssp             CGGGTCCTTTC---
T ss_pred             CCCCEECCCCHHHH
T ss_conf             98836689999999


No 10 
>2a41_C Wiskott-aldrich syndrome protein interacting protein; WIP, WH2, WAsp, DNAse I, ARP2/3, structural protein; HET: HIC NAG BMA ATP; 2.60A {Bos taurus}
Probab=1.58  E-value=3.7e+02  Score=10.59  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=0.0

Q ss_pred             HHCCCCHHHCCCCCHHHHCCCCCCCCCCC
Q ss_conf             10024001057862232018620046459
Q 537021.9.peg.3   51 SSRDGLVKDINTPDKQQTKNPITSSVPII   79 (79)
Q Consensus        51 ssrdglvkdintpdkqqtknpitssvpii   79 (79)
                      ..|..|..||..-.+-...-.-.-|.|++
T Consensus         3 ~gr~allsdi~kg~~lkk~vtndrsap~~   31 (32)
T 2a41_C            3 AGRNALLSDISKGKKLKKTVTNDRSAPIL   31 (32)
T ss_dssp             TTHHHHHHHHHHCCCCBCCCCEECCSCCC
T ss_pred             CCCHHHHHHHHHCHHHHHHHCCCCCCCCC
T ss_conf             44201777654011455554167767675


Done!