Query 537021.9.peg.374_1
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 19:06:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_374.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dpu_A RAB family protein; ro 27.4 28 0.00083 17.7 1.4 22 18-39 100-121 (125)
2 >1gwm_A NCP1, non-catalytic pr 19.1 19 0.00056 18.5 -0.8 10 26-35 122-131 (153)
3 >1wcu_A CBM29_1, non-catalytic 18.7 19 0.00057 18.5 -0.8 11 26-36 126-136 (153)
4 >1mhy_G Methane monooxygenase 10.3 37 0.0011 17.1 -1.4 12 17-28 37-48 (65)
5 >1mty_G Methane monooxygenase 10.2 37 0.0011 17.1 -1.4 12 17-28 45-56 (73)
6 >1p1j_A Inositol-3-phosphate s 9.4 58 0.0017 16.1 -0.6 11 32-42 33-43 (44)
7 >2zkr_e 60S ribosomal protein 7.6 84 0.0025 15.3 -0.4 17 16-32 80-96 (106)
8 >1t98_A KICB protein, chromoso 7.4 1.5E+02 0.0044 14.1 0.7 13 28-40 33-45 (170)
9 >2po4_A Virion RNA polymerase; 7.1 1.3E+02 0.0039 14.4 0.4 14 23-36 12-25 (53)
10 >3euh_A Protein KICB, chromoso 7.0 1.5E+02 0.0045 14.0 0.7 13 28-40 33-45 (175)
No 1
>>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum} (A:1-36,A:214-302)
Probab=27.39 E-value=28 Score=17.68 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHCCCEEECHHHHHHHHHHHH
Q ss_conf 1013633433110134444457
Q 537021.9.peg.3 18 PMMDCNVFLDPIWIKNIFVPLK 39 (42)
Q Consensus 18 pmmdcnvfldpiwiknifvplk 39 (42)
+.++--|||||-|.-++|-.+-
T Consensus 100 ~~L~d~VvLdPqWL~~vl~~Ii 121 (125)
T 3dpu_A 100 LDLSEIYVLDPHWVTIGVYRII 121 (125)
T ss_dssp TCCSSSCEECHHHHHHHHHHHH
T ss_pred CCCCCEEEECHHHHHHHHHHHH
T ss_conf 6548759978589999999884
No 2
>>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} (A:)
Probab=19.11 E-value=19 Score=18.53 Aligned_cols=10 Identities=60% Similarity=1.049 Sum_probs=7.5
Q ss_pred ECHHHHHHHH
Q ss_conf 3311013444
Q 537021.9.peg.3 26 LDPIWIKNIF 35 (42)
Q Consensus 26 ldpiwiknif 35 (42)
-+|||||||.
T Consensus 122 ~~~I~~r~ii 131 (153)
T 1gwm_A 122 GDRIWIKNLV 131 (153)
T ss_dssp CCCEEEEEEE
T ss_pred CCEEEEEEHH
T ss_conf 7788152101
No 3
>>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi} (A:)
Probab=18.71 E-value=19 Score=18.46 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=8.3
Q ss_pred ECHHHHHHHHH
Q ss_conf 33110134444
Q 537021.9.peg.3 26 LDPIWIKNIFV 36 (42)
Q Consensus 26 ldpiwiknifv 36 (42)
-+|||||||.-
T Consensus 126 ~~~I~~r~ii~ 136 (153)
T 1wcu_A 126 NIPIYMRYIIY 136 (153)
T ss_dssp CCCEEEEEEEE
T ss_pred CCEEEEEEEEE
T ss_conf 98588888876
No 4
>>1mhy_G Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} (G:85-149)
Probab=10.27 E-value=37 Score=17.08 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=9.0
Q ss_pred HHHHCCCEEECH
Q ss_conf 110136334331
Q 537021.9.peg.3 17 LPMMDCNVFLDP 28 (42)
Q Consensus 17 lpmmdcnvfldp 28 (42)
-|||-.|+|++-
T Consensus 37 PPvmPvN~F~~t 48 (65)
T 1mhy_G 37 PPVLPVNVFLRT 48 (65)
T ss_dssp TTTSCHHHHHHH
T ss_pred CCCCCCCCCCHH
T ss_conf 987760101321
No 5
>>1mty_G Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} (G:73-145)
Probab=10.19 E-value=37 Score=17.06 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.0
Q ss_pred HHHHCCCEEECH
Q ss_conf 110136334331
Q 537021.9.peg.3 17 LPMMDCNVFLDP 28 (42)
Q Consensus 17 lpmmdcnvfldp 28 (42)
-|||-.|+|++-
T Consensus 45 PPvmPvN~F~~t 56 (73)
T 1mty_G 45 PPIMPVNYFLDG 56 (73)
T ss_dssp TTTSCHHHHHHH
T ss_pred CCCCCCHHCCHH
T ss_conf 987760211322
No 6
>>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} (A:92-135)
Probab=9.45 E-value=58 Score=16.12 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=8.3
Q ss_pred HHHHHHHHHCC
Q ss_conf 34444457309
Q 537021.9.peg.3 32 KNIFVPLKSIL 42 (42)
Q Consensus 32 knifvplksil 42 (42)
+.+|+|+|++|
T Consensus 33 ~ev~vPf~~lL 43 (44)
T 1p1j_A 33 NDVYAPFNSLL 43 (44)
T ss_dssp CEEEEEGGGSS
T ss_pred CCCCCCHHHCC
T ss_conf 72466377617
No 7
>>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:87-192)
Probab=7.62 E-value=84 Score=15.32 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=12.8
Q ss_pred HHHHHCCCEEECHHHHH
Q ss_conf 11101363343311013
Q 537021.9.peg.3 16 LLPMMDCNVFLDPIWIK 32 (42)
Q Consensus 16 llpmmdcnvfldpiwik 32 (42)
....-|..+|||-||+-
T Consensus 80 ~vk~kD~R~FlDGIYv~ 96 (106)
T 2zkr_e 80 TVKNKDIRKFLDGIYVS 96 (106)
T ss_dssp CCSSSCTTTCCCEEEEE
T ss_pred CCCCCCCCEEECCEEEE
T ss_conf 51799842600677999
No 8
>>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} (A:118-287)
Probab=7.35 E-value=1.5e+02 Score=14.12 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1101344444573
Q 537021.9.peg.3 28 PIWIKNIFVPLKS 40 (42)
Q Consensus 28 piwiknifvplks 40 (42)
--|-+|.|.|||-
T Consensus 33 ~~Wr~nV~apLky 45 (170)
T 1t98_A 33 FHWHRNVYAPLKY 45 (170)
T ss_dssp HHHHHHTHHHHHH
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999875840634
No 9
>>2po4_A Virion RNA polymerase; right hand shape, transferase; 2.00A {Enterobacteria phage N4} PDB: 3c2p_A 3c3l_A 3c46_A (A:563-587,A:1077-1104)
Probab=7.09 E-value=1.3e+02 Score=14.38 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=9.8
Q ss_pred CEEECHHHHHHHHH
Q ss_conf 33433110134444
Q 537021.9.peg.3 23 NVFLDPIWIKNIFV 36 (42)
Q Consensus 23 nvfldpiwiknifv 36 (42)
.-...|-||.||--
T Consensus 12 gglftpdwirniak 25 (53)
T 2po4_A 12 GGLFTPDWIRNIAK 25 (53)
T ss_dssp CSCCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
T ss_conf 78678788733443
No 10
>>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (A:118-292)
Probab=6.97 E-value=1.5e+02 Score=14.04 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1101344444573
Q 537021.9.peg.3 28 PIWIKNIFVPLKS 40 (42)
Q Consensus 28 piwiknifvplks 40 (42)
--|-+|.|.|||-
T Consensus 33 ~~Wr~nV~apLky 45 (175)
T 3euh_A 33 FHWHRNVYAPLKY 45 (175)
T ss_dssp HHHHHTTHHHHHH
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999875731744
Done!