RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.374_1
         (42 letters)



>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 74

 Score = 23.8 bits (52), Expect = 4.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 6  FIIITPPATVLL 17
          FI  TPPA VLL
Sbjct: 2  FITKTPPAAVLL 13


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 163,423
Number of extensions: 4215
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 42
Length of database: 2,407,596
Length adjustment: 15
Effective length of query: 27
Effective length of database: 2,201,646
Effective search space: 59444442
Effective search space used: 59444442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (21.8 bits)