RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.393_1
         (150 letters)



>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
           transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
           PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
          Length = 456

 Score =  137 bits (347), Expect = 8e-34
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 3/129 (2%)

Query: 10  AEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQ 69
                +  P+++     T+V    G ++    L      DI LL +  I  V++HG    
Sbjct: 28  VAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTL-NKLAADIGLLSQLGIRLVLIHGAYHF 86

Query: 70  IGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQ--TGTQAIGICGK 127
           +  +    G    +  GLR+TD+ +    +       ++   +L        +A  +   
Sbjct: 87  LDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLV 146

Query: 128 DGNMVFAEK 136
            GN + A  
Sbjct: 147 SGNFLTARP 155


>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
           biosynthesis, FEED-BACK inhibition, hexamer,
           transferase; HET: NLG ADP; 2.95A {Pseudomonas
           aeruginosa} SCOP: c.73.1.2
          Length = 300

 Score =  131 bits (331), Expect = 5e-32
 Identities = 60/139 (43%), Positives = 93/139 (66%)

Query: 1   MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP 60
           ++       A++L + LP+++ +  +T+V+KYGG+ M   +L   F  D+ L+K   I P
Sbjct: 2   LSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINP 61

Query: 61  VIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQ 120
           V+VHGGGPQIG +L+++ I+S F +G+R+TD  T +VVEMVL G +NK IV+LIN+ G  
Sbjct: 62  VVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGS 121

Query: 121 AIGICGKDGNMVFAEKARH 139
           AIG+ GKD  ++ A+K   
Sbjct: 122 AIGLTGKDAELIRAKKLTV 140


>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
           regulation, transferase, cyanobacteria, transcription;
           HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
          Length = 321

 Score =  126 bits (317), Expect = 2e-30
 Identities = 63/131 (48%), Positives = 84/131 (64%)

Query: 9   QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP 68
           +  IL + LP++Q +   T+VVKYGG  M   +L +  + DI  L    + PV+VHGGGP
Sbjct: 33  RVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGP 92

Query: 69  QIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128
           +I A L ++GI+ +F NGLR+TD  T EVVEMVL G +NK IVS IN TG +A+G CG D
Sbjct: 93  EINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTD 152

Query: 129 GNMVFAEKARH 139
           G +V A     
Sbjct: 153 GRLVLARPHDQ 163


>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
           kinase, phosphoryl group transfer, arginine metabolism,
           transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
           SCOP: c.73.1.2
          Length = 282

 Score =  121 bits (304), Expect = 7e-29
 Identities = 56/124 (45%), Positives = 85/124 (68%)

Query: 9   QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP 68
              +L + LP+++ +  +T V+K+GG  M   +  K F+ DI LLK + I P+IVHGGGP
Sbjct: 5   TVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGP 64

Query: 69  QIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128
            I  +++ +GI+  F+NG R+TD++T E+VEMVL G INK+IV  +N  G +A+GICGKD
Sbjct: 65  AISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKD 124

Query: 129 GNMV 132
             ++
Sbjct: 125 SKLI 128


>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
           regulation of arginine biosynthesis, nitrogen
           metabolism, kinase, transferase, transcription; HET: ARG
           ADP NLG ATP; 2.51A {Arabidopsis thaliana}
          Length = 298

 Score =  110 bits (275), Expect = 1e-25
 Identities = 60/137 (43%), Positives = 88/137 (64%)

Query: 7   QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66
            ++ EIL + LPF+Q +  +TIVVKYGG  M   +L    V+D+ LL    + P++VHGG
Sbjct: 18  DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGG 77

Query: 67  GPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICG 126
           GP I   L+++ I ++F +GLR+TD  T E+V MVL G +NK +VSLIN  G  A+G+ G
Sbjct: 78  GPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSG 137

Query: 127 KDGNMVFAEKARHSLRL 143
            DG ++ A    +S +L
Sbjct: 138 HDGRLLTARPVPNSAQL 154


>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
           protein structure initiative, NYSGXRC, PSI; 2.80A
           {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2
          Length = 299

 Score =  105 bits (263), Expect = 4e-24
 Identities = 50/125 (40%), Positives = 80/125 (64%)

Query: 7   QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66
             +A++L + LP+++    + +VVKYGG+ M    L + F  D+A L+   I PV+VHGG
Sbjct: 7   HIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGG 66

Query: 67  GPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICG 126
           GPQI A+L ++GI+  F+ G R+T  +  +V  MVL G + +++V+LIN  G  A+GI G
Sbjct: 67  GPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITG 126

Query: 127 KDGNM 131
           +D  +
Sbjct: 127 EDAQL 131


>2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 1.92A {Thermus thermophilus HB8}
          Length = 269

 Score = 92.7 bits (229), Expect = 3e-20
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 28  IVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG- 86
           IVVK GG      +       D A L K  +  ++VHGG  +   V E +G   +F    
Sbjct: 2   IVVKVGGAEG--INYEA-VAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHP 58

Query: 87  ----LRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFA 134
                R+TD++T E+ EMV  G +NK++V L+ + G  AIG+ G DG +   
Sbjct: 59  GGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVG 110


>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 1.80A {Aeropyrum pernix K1}
          Length = 316

 Score = 91.5 bits (226), Expect = 8e-20
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 25  NETIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74
               V+  GG+ +    +           K   + IA +       VI HG GPQ+G + 
Sbjct: 4   GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLS 63

Query: 75  EKMGIKSKFENGLRI------TDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128
           E             +      T      +++  L   + ++ ++++       + +   D
Sbjct: 64  EAFEALPPERPRQPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSD 123

Query: 129 GNMVFAEKA 137
            +     K 
Sbjct: 124 PSFNNPSKP 132


>3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target,
           transferase; 3.00A {Giardia lamblia atcc 50803}
          Length = 317

 Score = 88.6 bits (219), Expect = 5e-19
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 16/129 (12%)

Query: 27  TIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76
           T+V+  GG+ M                +   ++I  + K+    V+  G GPQ+GA+  +
Sbjct: 7   TVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQ 66

Query: 77  MGIKSKFENGLRI------TDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGN 130
               +     + +      +      ++   +              T      +  KD  
Sbjct: 67  NQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQA 126

Query: 131 MVFAEKARH 139
                K   
Sbjct: 127 FTNPTKPVG 135


>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
           arginine biosynthesis, phosphoryl group transfer,
           protein crystallography; HET: NLG ANP; 1.5A {Escherichia
           coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
           1ohb_A*
          Length = 258

 Score = 86.7 bits (213), Expect = 2e-18
 Identities = 26/109 (23%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

Query: 26  ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVI-VHGGGPQIGAVLEKMGIKSKFE 84
             +++K GG +++  +  +   + +   ++S+  P++ VHGGG  +  +++ + +  K +
Sbjct: 3   NPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKK 62

Query: 85  NGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVF 133
           NGLR+T     +++   LAG+ NK +++   +    A+G+   DG+ V 
Sbjct: 63  NGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVK 111


>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP
           synthesys, open alpha/beta sheet, phosphotransferase,
           transferase; HET: ADP; 1.39A {Enterococcus faecalis}
           PDB: 1b7b_A 2we4_A*
          Length = 310

 Score = 85.3 bits (210), Expect = 5e-18
 Identities = 23/146 (15%), Positives = 41/146 (28%), Gaps = 31/146 (21%)

Query: 25  NETIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76
            + +VV  GG+ +   D S              +  L K     ++ HG GPQ+G +L +
Sbjct: 2   GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ 61

Query: 77  MGIKSKFENGLRITDQQTAEVVEMV-----------------------LAGSINKKIVSL 113
                  +N     D   A     +                       +   +       
Sbjct: 62  QQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADE 121

Query: 114 INQTGTQAIGICGKDGNMVFAEKARH 139
             +  T+ IG    +     A +A  
Sbjct: 122 AFKNPTKPIGPFLTEAEAKEAMQAGA 147


>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase,
           hyperthermophiles, ADP site, phosphoryl group transfer;
           HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
          Length = 314

 Score = 81.8 bits (201), Expect = 6e-17
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 23/134 (17%)

Query: 25  NETIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74
            + +V+  GG+ +                +     IA +       VI HG GPQ+G++L
Sbjct: 2   GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61

Query: 75  EKMGIKSKFENGLRITDQQTAEVVEMVL-------------AGSINKKIVSLINQTGTQA 121
             M                   + +  +                + KK+V++I QT    
Sbjct: 62  LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121

Query: 122 IGICGKDGNMVFAE 135
                ++       
Sbjct: 122 NDPAFQNPTKPVGP 135


>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
           transferase; HET: ADP; 2.15A {Methanothermobacter
           thermautotrophicusorganism_taxid}
          Length = 269

 Score = 71.3 bits (174), Expect = 8e-14
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 25  NETIVVKYGGHVMNCTD-----LSKDFVNDIA--LLKKSNITPVIVHGGGPQIGAVLEKM 77
           +  I++K GG V+   D     + +D +  IA  +   S  + +IVHG G        + 
Sbjct: 2   SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLMIVHGAGSFGHPFAGEY 61

Query: 78  GIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKA 137
            I S+ EN   +  ++    +       +N  +   +   G  A+ +         A + 
Sbjct: 62  RIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRI 121

Query: 138 RH 139
            H
Sbjct: 122 SH 123


>1b7b_A Carbamate kinase; phosphotransferase, arginine catabolism, ATP
           synthesys, acylphosphate-making enzymes, open alpha/beta
           sheet; 2.80A {Enterococcus faecium} SCOP: c.73.1.1
          Length = 310

 Score = 68.5 bits (166), Expect = 6e-13
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 8/115 (6%)

Query: 25  NETIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76
            + +VV  GG+ +   D S              +  L K     ++ HG GPQ+G +L +
Sbjct: 2   GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ 61

Query: 77  MGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNM 131
                  +N     D   A     +     N     L      + +        +
Sbjct: 62  QQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVV 116


>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding,
           transferase, methanocald jannaschii, isopentenyl
           monophosphate; 2.05A {Methanocaldococcus jannaschii}
           PDB: 3k4y_A* 3k52_A* 3k56_A*
          Length = 266

 Score = 64.8 bits (157), Expect = 8e-12
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 28  IVVKYGGHVMNCTD----LSKDFVNDIA----------LLKKSNITPVIVHGGGPQIGAV 73
            ++K GG +++  +    +  D +  IA            +   I  ++VHGGG   G  
Sbjct: 9   TILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGG-AFGHP 67

Query: 74  LEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMV 132
           + K  +K +    + I  ++    ++  +    N  I+  +      A+ I      + 
Sbjct: 68  VAKKYLKIEDGKKIFINMEKGFWEIQRAM-RRFNNIIIDTLQSYDIPAVSIQPSSFVVF 125


>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
           transfer, transferase; 1.53A {Streptomyces wedmorensis}
           PDB: 3d41_A*
          Length = 286

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 20/124 (16%)

Query: 17  LPFVQFYENETIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIV-HGGG 67
           +P       + + +K GG + +  D            F  + A L ++    +++  GGG
Sbjct: 15  VPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGG 74

Query: 68  PQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGK 127
                 +        F           +          + K+    +   G  A  +   
Sbjct: 75  AFGHGAIRDHDSTHAF-----------SLAGLTEATFEVKKRWAEKLRGIGVDAFPLQLA 123

Query: 128 DGNM 131
               
Sbjct: 124 AMCT 127


>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
           pathway, isopentenyl phsophate kinase, beta-alpha
           sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
           {Thermoplasma acidophilum} PDB: 3lkk_A*
          Length = 249

 Score = 61.2 bits (148), Expect = 8e-11
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 10/121 (8%)

Query: 28  IVVKYGGHVMNCTDLSKDFVND-----IALLKKSNITPVIVHGGGPQIGAVLEKMGIKSK 82
           +++K GG V+      +          + +L        +VHGGG        + G+   
Sbjct: 6   MILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGP 65

Query: 83  FENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARHSLR 142
                 I        +      +++  ++  + + G + I +                +R
Sbjct: 66  KNPRSSIGY-----SIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIR 120

Query: 143 L 143
            
Sbjct: 121 Y 121


>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
           metal binding protein; HET: ATP; 1.60A {Azotobacter
           vinelandii}
          Length = 270

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 26  ETIVVKYGGHVM--NCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKF 83
           +  V+K GG  +           V++I   +K++   +I  G G      L  +      
Sbjct: 37  DATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHK-LLIGTGAGT-RARHLYSIAAGLGL 94

Query: 84  ENGLRITDQQTAEVVEMV---LAGSINKKIVSLINQTGTQAIGICGKDGNMV 132
             G+    Q  + V +     L   + K  + ++   G  A+ +   + N V
Sbjct: 95  PAGVL--AQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAV 144


>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
           structure, metal binding protein; HET: ATP; 1.60A
           {Azotobacter vinelandii}
          Length = 276

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 26  ETIVVKYGGHVM-NCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFE 84
              VVK GG VM    D     V ++  L   +   +I+ G G +      +       +
Sbjct: 40  WLQVVKIGGRVMDRGADAILPLVEELRKLLPEHR-LLILTGAGVRA-----RHVFSVGLD 93

Query: 85  NGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGN 130
            GL +         E    G I   + +++   G   +        
Sbjct: 94  LGLPVGSLAPLAASEAGQNGHI---LAAMLASEGVSYVEHPTVADQ 136


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 35.3 bits (81), Expect = 0.006
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%)

Query: 49   DIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSI-N 107
            DI +    N+T   +H GG                E G RI +  +A + E ++ G +  
Sbjct: 1663 DIVINNPVNLT---IHFGG----------------EKGKRIRENYSAMIFETIVDGKLKT 1703

Query: 108  KKIVSLINQTGT 119
            +KI   IN+  T
Sbjct: 1704 EKIFKEINEHST 1715


>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
           1g65_G 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G*
           3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 1g0u_G
           1fnt_A 1z7q_A 2zcy_G* 3bdm_G*
          Length = 243

 Score = 33.6 bits (76), Expect = 0.017
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 114 INQTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
            NQT   ++ + GKD  +V ++K      L P T  
Sbjct: 26  TNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVS 61


>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
           initiative, NEW YORK SGX research center for structural
           genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
           jejuni} SCOP: c.73.1.3
          Length = 251

 Score = 31.6 bits (70), Expect = 0.086
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 8/118 (6%)

Query: 27  TIVVKYGGHVMN-----CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81
            IVVK G HV++       +  K+ V  +A L +     ++V      I A   K+ I  
Sbjct: 3   RIVVKVGSHVISEENTLSFERLKNLVAFLAKLME-KYEVILVTSAA--ISAGHTKLDIDR 59

Query: 82  KFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH 139
           K     ++        +  V    + K          T       K            
Sbjct: 60  KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMM 117


>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase,
          UMP kinase, aspartokinase fold, pyrimidine nucleotide
          synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
          solfataricus} PDB: 2j4k_A* 2j4l_A*
          Length = 226

 Score = 30.3 bits (67), Expect = 0.21
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 28 IVVKYGGHVMNCTDLS--KDFVNDIALLKKSNITPVIVHGGG 67
          I++K  G   +  ++         I  L  +     IV GGG
Sbjct: 3  IILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGG 44


>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 246

 Score = 29.9 bits (67), Expect = 0.21
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 114 INQTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
           INQ G  ++ + GKD  ++  +K      L  +T  
Sbjct: 32  INQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 67


>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
           PDB: 2kai_B 1hia_B
          Length = 152

 Score = 29.6 bits (65), Expect = 0.31
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 43  SKDFVNDIALLK-------KSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTA 95
            KD+ +D+ LL+          +  + +    P++G+  E  G  S              
Sbjct: 3   GKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEI 62

Query: 96  EVVEM 100
           + V++
Sbjct: 63  QCVQL 67


>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase,
          amino-acid biosynthesis, transferase, feedback
          regulation, PUA domain; HET: RGP; 2.5A {Escherichia
          coli} PDB: 2j5t_A*
          Length = 367

 Score = 29.3 bits (65), Expect = 0.42
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 27 TIVVKYGGHVMNCTDLS------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIK 80
          T+VVK G  V+             + V   A L  +    VIV  G   I A  E +G  
Sbjct: 6  TLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGREHLGYP 63

Query: 81 SK 82
            
Sbjct: 64 EL 65


>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 263

 Score = 28.8 bits (64), Expect = 0.51
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTK 148
            G+  +G+  K   ++ A K   S   +   K
Sbjct: 31  QGSATVGLKSKTHAVLVALKRAQSELAAHQKK 62


>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
           1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
           3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3bdm_E*
           1z7q_F 1fnt_F* 2zcy_E* 1g0u_E
          Length = 233

 Score = 28.9 bits (64), Expect = 0.51
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
            G+  +G+      ++ A K R++  LS   KK
Sbjct: 30  QGSVTVGLRSNTHAVLVALK-RNADELSSYQKK 61


>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
           11S, hydrolase/hydrolase activator complex; 1.90A
           {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
           1pma_A 3c91_A 3c92_A 1yau_A 3jrm_A 3jse_A 3jtl_A
          Length = 233

 Score = 28.6 bits (63), Expect = 0.65
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
            G+ A+G+   +G ++ ++K   S  +  N+ +
Sbjct: 33  KGSTALGMKFANGVLLISDKKVRSRLIEQNSIE 65


>2ij9_A Uridylate kinase; structural genomics, protein structure
          initiative, PSI, nysgxrc; 2.90A {Archaeoglobus fulgidus
          dsm 4304} SCOP: c.73.1.3
          Length = 219

 Score = 28.3 bits (62), Expect = 0.68
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 28 IVVKYGGH-VMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66
          +V+  GG  + N ++  ++F   I  + + N   V+V GG
Sbjct: 3  VVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGG 42


>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 233

 Score = 28.4 bits (63), Expect = 0.75
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
             G  ++GI   +G ++  EK + S+     +  
Sbjct: 29  AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 62


>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
          transfer, pyrimidine biosynthesis, transferase; 2.40A
          {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
          2bmu_A* 2bri_A*
          Length = 244

 Score = 28.4 bits (62), Expect = 0.78
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 28 IVVKYGGHVMNCTDLSKDFV----NDIALLKKSNITPVIVHGGGPQ 69
          IV   GG V+   +   DF+      +  + + +   V+V GG   
Sbjct: 22 IVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLA 67


>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 254

 Score = 28.0 bits (62), Expect = 0.87
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
             + AIGI  KDG +   EK   S      + K
Sbjct: 32  NSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64


>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
           1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
           2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
           3gpj_A* 3gpt_A* 3gpw_A* 3hye_A*
          Length = 250

 Score = 27.8 bits (61), Expect = 0.97
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
            G  ++GI   +G ++  EK   S      T  
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62


>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
           duplication, multienzyme complex, transcarboxylase; HET:
           MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
           c.14.1.4 c.14.1.4 PDB: 1on9_A*
          Length = 523

 Score = 27.8 bits (61), Expect = 1.2
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 3   EKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVI 62
            K+ +   + L    PF+ FY++    ++ G        LS       A +K S + P I
Sbjct: 117 TKVVETMEQALLTGTPFLFFYDSGGARIQEG-----IDSLSGYGKMFFANVKLSGVVPQI 171

Query: 63  VHGGGPQIGAV 73
               GP  G  
Sbjct: 172 AIIAGPCAGGA 182


>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
           {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
          Length = 246

 Score = 27.6 bits (61), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
            G  AIGI  K+G ++ A+K   S  L  +T +
Sbjct: 33  RGATAIGIKCKEGVILIADKRVGSKLLEKDTIE 65


>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
           11S, hydrolase/hydrolase activator complex; 1.90A
           {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
           1yau_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
          Length = 217

 Score = 27.5 bits (60), Expect = 1.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 116 QTGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149
           +TGT  +GI  KD  ++  E+     +  +  N KK
Sbjct: 6   ETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKK 41


>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
           1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
           3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3bdm_B*
           1z7q_C* 2zcy_B* 1g0u_B 1fnt_C
          Length = 244

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHS--LRLSPNTKK 149
               AIGI   DG ++ AE+   S  L    +T+K
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 64


>1y0u_A Arsenical resistance operon repressor, putative; structural
           genomics, protein structure initiative, PSI; HET: MSE;
           1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
          Length = 96

 Score = 27.2 bits (60), Expect = 1.5
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 72  AVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGS 105
            VLE      +      +TD    ++V+ +  GS
Sbjct: 65  KVLEAGFCIERVGERWVVTDA--GKIVDKIRGGS 96


>3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen,
           virulence factor, cytoplasm, hydrolase, nucleus,
           protease; HET: GDT; 2.70A {Saccharomyces cerevisiae}
           SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G
          Length = 287

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147
           + GT +IGI   DG +   EK   S  L P  
Sbjct: 31  ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK 62


>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
           ATP-binding, aminoacyl-tRNA synthetase, ligas
           nucleotide-binding, protein biosynthesis, ligase-RNA
           comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
          Length = 466

 Score = 27.2 bits (60), Expect = 1.6
 Identities = 4/24 (16%), Positives = 12/24 (50%)

Query: 87  LRITDQQTAEVVEMVLAGSINKKI 110
            R++ +  A +V +   G +  ++
Sbjct: 357 TRLSPEGLARLVGLFERGEVTSRV 380


>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
           kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
           tuberculosis}
          Length = 281

 Score = 27.1 bits (59), Expect = 1.7
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 28  IVVKYGGHVMNCTDLS------KDFVNDIALLKKSNITPVIVHGG-GPQIGAVLEKMGIK 80
           +++K GG +     +             IA + +  +   +V GG     GA L+++G++
Sbjct: 53  VLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGME 112


>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
           complement system, convertase, complement alternate
           pathway, complement pathway; HET: NAG P6G; 2.20A {Homo
           sapiens} PDB: 3hs0_D* 2ok5_A*
          Length = 741

 Score = 27.2 bits (59), Expect = 1.7
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 21  QFYENETIVV--KYGGHVMNCTDLSKDFVNDIALLK 54
           +  E E ++    Y  +      + + +  D+AL+K
Sbjct: 521 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIK 556


>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
           1g65_F 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F*
           3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 1g0u_F
          Length = 244

 Score = 26.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147
           + GT +IGI   DG +   EK   S  L P  
Sbjct: 28  ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK 59


>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 241

 Score = 26.8 bits (59), Expect = 1.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147
           + G+ AIGI   +G  +  EK   S  + P++
Sbjct: 32  KLGSTAIGIQTSEGVCLAVEKRITSPLMEPSS 63


>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP
           B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A*
           3koy_A* 3koz_A* 3kp0_A* 3kox_A*
          Length = 763

 Score = 27.1 bits (60), Expect = 1.9
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 27  TIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP-VIVHGGGPQIG-AVLEKMGIKSKFE 84
           TI+     H  N   +         L  +  I   +++  GG Q+   V  K G+ + F 
Sbjct: 665 TIISHDDIHYKNMKRI-------HELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDAGFG 717

Query: 85  NGLRITD 91
            G +   
Sbjct: 718 RGSKGIH 724


>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 219

 Score = 27.0 bits (59), Expect = 2.0
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149
           TGT  +G+  + G ++ A+   +  SL    N  +
Sbjct: 7   TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41


>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase,
           protease, threonine protease; 4.10A {Methanocaldococcus
           jannaschii}
          Length = 219

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 3/33 (9%), Positives = 6/33 (18%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
                I +             R  +  +   K 
Sbjct: 37  KIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKM 69


>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
           1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
           3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 2z5c_C
           3bdm_D* 1z7q_E 1fnt_E* 2zcy_D* 1g0u_D
          Length = 242

 Score = 26.6 bits (58), Expect = 2.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149
           + G+ AIGI  K+G ++  EK   S  L  ++ +
Sbjct: 24  KLGSTAIGIATKEGVVLGVEKRATSPLLESDSIE 57


>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 261

 Score = 26.5 bits (58), Expect = 2.5
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 117 TGTQAIGICGKDGNMVFAEK 136
                +GI   DG ++ AE+
Sbjct: 30  HAGTCLGILANDGVLLAAER 49


>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
           site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
           scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
           2fpp_B* 1euc_B* 1eud_B*
          Length = 395

 Score = 26.2 bits (57), Expect = 2.7
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 15/89 (16%)

Query: 28  IVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGL 87
           I+V   G ++NC  ++         L+     P++V   G                 +GL
Sbjct: 321 ILVNIFGGIVNCAIIANGITKACRELELK--VPLVVRLEGTN-----VHEAQNILTNSGL 373

Query: 88  RITDQQTAEVVEMVLAGSINKKIVSLINQ 116
            IT     E  +        KK V+ + +
Sbjct: 374 PITSAVDLE--DAA------KKAVASVTK 394


>1o13_A Probable NIFB protein; structural genomics, TM1816, JCSG, PSI,
           protein structure initiative, joint center for
           structural genomics; 1.83A {Thermotoga maritima} SCOP:
           c.55.5.1 PDB: 1t3v_A
          Length = 136

 Score = 26.5 bits (58), Expect = 2.9
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 18  PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKM 77
           P+  F + +   +       N              +K+     VIV G G +  A  E M
Sbjct: 37  PYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIAAFEAM 96

Query: 78  GIKSKFENGLRITDQQTAEVVEMVLAGSINK 108
           G+K      ++       EVV   L+G +  
Sbjct: 97  GVKV-----IKGASGTVEEVVNQYLSGQLKD 122


>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel,
          glycosidase family 56, allergen, hydrolase; 1.60A {Apis
          mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
          Length = 350

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 51 ALLKKSNITPVIVHGGGPQIG---AVLEKM 77
          ALLK  N   V  +GG PQ+G     L+  
Sbjct: 62 ALLKDPNGNVVARNGGVPQLGNLTKHLQVF 91


>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
           1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
           3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3bdm_C*
           1z7q_D 1fnt_D* 2zcy_C* 1g0u_C
          Length = 241

 Score = 26.2 bits (57), Expect = 3.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 117 TGTQAIGICGKDGNMVFAEK 136
            GT A+G+ GK+  ++  E+
Sbjct: 27  RGTCAVGVKGKNCVVLGCER 46


>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 248

 Score = 26.1 bits (57), Expect = 3.1
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKKT 150
            G+ A+G+ G+D  ++  EK   +      T + 
Sbjct: 28  KGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61


>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
           NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
           d.153.1.4 PDB: 2zcy_M* 3bdm_M*
          Length = 266

 Score = 26.2 bits (57), Expect = 3.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 117 TGTQAIGICGKDGNMVFAEK 136
           TGT  I +   +G ++ A+ 
Sbjct: 40  TGTSVISMKYDNGVIIAADN 59


>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
           1jd2_M* 1g65_M 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M*
           3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M*
           3hye_M*
          Length = 233

 Score = 25.8 bits (56), Expect = 3.8
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149
           TGT  I +   +G ++ A+   +  SL      ++
Sbjct: 7   TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 41


>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
           biotin, glutamate fermentation, lyase; HET: COO; 1.75A
           {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
          Length = 588

 Score = 25.9 bits (56), Expect = 4.3
 Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 1/70 (1%)

Query: 3   EKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVI 62
           E + +         LP +       +       V              + L +  I PVI
Sbjct: 128 ENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGI-PVI 186

Query: 63  VHGGGPQIGA 72
           V   G     
Sbjct: 187 VGIYGTNPAG 196


>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
           b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
          Length = 497

 Score = 25.7 bits (55), Expect = 4.7
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 21  QFYENETIVV--KYGGHVMNCTDLSKDFVNDIALLK 54
           +  E E ++    Y  +      + + +  D+AL+K
Sbjct: 279 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIK 314


>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
           antigen processing, hydrolase, protease; 1.90A
           {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g65_N*
           1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N*
           2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N*
           3gpj_N* 3gpt_N* 3gpw_N* 3hye_N*
          Length = 205

 Score = 25.5 bits (55), Expect = 5.9
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 117 TGTQAIGICGKDGNMVFAEK 136
            G   + +  KDG ++ A+ 
Sbjct: 8   LGASIMAVTFKDGVILGADS 27


>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
           asparaginase 1 family, GATD subfamily, lyase; 3.00A
           {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
          Length = 633

 Score = 25.4 bits (55), Expect = 6.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 88  RITDQQTAEVVEMVLAGSINKKIV 111
            +TD+   E  ++ L G I K+  
Sbjct: 521 NVTDEHIREAFQLYLEGKIAKEAF 544


>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix,
           fidelity, processivity, transferase; 2.30A {Sulfolobus
           solfataricus} SCOP: e.8.1.7
          Length = 221

 Score = 25.1 bits (54), Expect = 6.2
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 31  KYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81
           K  G  +      +DF+N++ + +        + G G  +   L ++GI+ 
Sbjct: 165 KPNGLGVIRPTEVQDFLNELDIDE--------IPGIGSVLARRLNELGIQK 207


>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
           ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
          Length = 213

 Score = 25.0 bits (54), Expect = 6.5
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149
            G   + I G+D  +V ++   +      + ++ K
Sbjct: 8   NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK 42


>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
           endopeptidase comple mycobacterium tuberculosis,
           hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
           PDB: 3h6f_A 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A
           3mfe_D
          Length = 248

 Score = 25.0 bits (54), Expect = 6.5
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLR 142
                + +    G +  AE    SL+
Sbjct: 26  RAKSVVALAYAGGVLFVAENPSRSLQ 51


>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
           heterotetramer, ligase, ATP-grAsp fold, rossmann fold;
           HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1
           d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B*
           2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
          Length = 388

 Score = 25.0 bits (54), Expect = 7.4
 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 28  IVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGL 87
           ++V   G ++ C  ++   +   A+ +     PV+V   G        ++G K   ++GL
Sbjct: 314 VLVNIFGGIVRCDLIADGIIG--AVAEVGVNVPVVVRLEGNN-----AELGAKKLADSGL 366

Query: 88  RITDQQTAEVVEMVLAGSINKKIVSLIN 115
            I   +     +        +++V+ + 
Sbjct: 367 NIIAAKGLT--DAA------QQVVAAVE 386


>3h6i_A Proteasome (alpha subunit) PRCA; binding sites, oxazolidin-2-ONE,
           crystallography, X-RAY, protease inhibitors; 2.43A
           {Mycobacterium tuberculosis} PDB: 3h6f_A 2fhh_A* 2fhg_A
           3hfa_D 3hf9_A
          Length = 248

 Score = 24.9 bits (54), Expect = 8.3
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 117 TGTQAIGICGKDGNMVFAEKARHSLR 142
                + +    G +  AE    SL+
Sbjct: 26  RAKSVVALAYAGGVLFVAENPSRSLQ 51


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,236,946
Number of extensions: 54930
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 75
Length of query: 150
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 66
Effective length of database: 3,656,734
Effective search space: 241344444
Effective search space used: 241344444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)