RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.393_1 (150 letters) >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Length = 456 Score = 137 bits (347), Expect = 8e-34 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 10 AEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQ 69 + P+++ T+V G ++ L DI LL + I V++HG Sbjct: 28 VAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTL-NKLAADIGLLSQLGIRLVLIHGAYHF 86 Query: 70 IGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQ--TGTQAIGICGK 127 + + G + GLR+TD+ + + ++ +L +A + Sbjct: 87 LDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFARAPSVPLV 146 Query: 128 DGNMVFAEK 136 GN + A Sbjct: 147 SGNFLTARP 155 >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Length = 300 Score = 131 bits (331), Expect = 5e-32 Identities = 60/139 (43%), Positives = 93/139 (66%) Query: 1 MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP 60 ++ A++L + LP+++ + +T+V+KYGG+ M +L F D+ L+K I P Sbjct: 2 LSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINP 61 Query: 61 VIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQ 120 V+VHGGGPQIG +L+++ I+S F +G+R+TD T +VVEMVL G +NK IV+LIN+ G Sbjct: 62 VVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGS 121 Query: 121 AIGICGKDGNMVFAEKARH 139 AIG+ GKD ++ A+K Sbjct: 122 AIGLTGKDAELIRAKKLTV 140 >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transferase, cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Length = 321 Score = 126 bits (317), Expect = 2e-30 Identities = 63/131 (48%), Positives = 84/131 (64%) Query: 9 QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP 68 + IL + LP++Q + T+VVKYGG M +L + + DI L + PV+VHGGGP Sbjct: 33 RVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGP 92 Query: 69 QIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 +I A L ++GI+ +F NGLR+TD T EVVEMVL G +NK IVS IN TG +A+G CG D Sbjct: 93 EINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTD 152 Query: 129 GNMVFAEKARH 139 G +V A Sbjct: 153 GRLVLARPHDQ 163 >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Length = 282 Score = 121 bits (304), Expect = 7e-29 Identities = 56/124 (45%), Positives = 85/124 (68%) Query: 9 QAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGP 68 +L + LP+++ + +T V+K+GG M + K F+ DI LLK + I P+IVHGGGP Sbjct: 5 TVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGP 64 Query: 69 QIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 I +++ +GI+ F+NG R+TD++T E+VEMVL G INK+IV +N G +A+GICGKD Sbjct: 65 AISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKD 124 Query: 129 GNMV 132 ++ Sbjct: 125 SKLI 128 >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Length = 298 Score = 110 bits (275), Expect = 1e-25 Identities = 60/137 (43%), Positives = 88/137 (64%) Query: 7 QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66 ++ EIL + LPF+Q + +TIVVKYGG M +L V+D+ LL + P++VHGG Sbjct: 18 DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGG 77 Query: 67 GPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICG 126 GP I L+++ I ++F +GLR+TD T E+V MVL G +NK +VSLIN G A+G+ G Sbjct: 78 GPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSG 137 Query: 127 KDGNMVFAEKARHSLRL 143 DG ++ A +S +L Sbjct: 138 HDGRLLTARPVPNSAQL 154 >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2 Length = 299 Score = 105 bits (263), Expect = 4e-24 Identities = 50/125 (40%), Positives = 80/125 (64%) Query: 7 QFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66 +A++L + LP+++ + +VVKYGG+ M L + F D+A L+ I PV+VHGG Sbjct: 7 HIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGG 66 Query: 67 GPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICG 126 GPQI A+L ++GI+ F+ G R+T + +V MVL G + +++V+LIN G A+GI G Sbjct: 67 GPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITG 126 Query: 127 KDGNM 131 +D + Sbjct: 127 EDAQL 131 >2egx_A Putative acetylglutamate kinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.92A {Thermus thermophilus HB8} Length = 269 Score = 92.7 bits (229), Expect = 3e-20 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Query: 28 IVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENG- 86 IVVK GG + D A L K + ++VHGG + V E +G +F Sbjct: 2 IVVKVGGAEG--INYEA-VAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHP 58 Query: 87 ----LRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFA 134 R+TD++T E+ EMV G +NK++V L+ + G AIG+ G DG + Sbjct: 59 GGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVG 110 >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Length = 316 Score = 91.5 bits (226), Expect = 8e-20 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 16/129 (12%) Query: 25 NETIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74 V+ GG+ + + K + IA + VI HG GPQ+G + Sbjct: 4 GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLS 63 Query: 75 EKMGIKSKFENGLRI------TDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKD 128 E + T +++ L + ++ ++++ + + D Sbjct: 64 EAFEALPPERPRQPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSD 123 Query: 129 GNMVFAEKA 137 + K Sbjct: 124 PSFNNPSKP 132 >3kzf_A Carbamate kinase; arginine dihydrolase pathway, drug target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 Score = 88.6 bits (219), Expect = 5e-19 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 16/129 (12%) Query: 27 TIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76 T+V+ GG+ M + ++I + K+ V+ G GPQ+GA+ + Sbjct: 7 TVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQ 66 Query: 77 MGIKSKFENGLRI------TDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGN 130 + + + + ++ + T + KD Sbjct: 67 NQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQA 126 Query: 131 MVFAEKARH 139 K Sbjct: 127 FTNPTKPVG 135 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* Length = 258 Score = 86.7 bits (213), Expect = 2e-18 Identities = 26/109 (23%), Positives = 60/109 (55%), Gaps = 1/109 (0%) Query: 26 ETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVI-VHGGGPQIGAVLEKMGIKSKFE 84 +++K GG +++ + + + + ++S+ P++ VHGGG + +++ + + K + Sbjct: 3 NPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKK 62 Query: 85 NGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVF 133 NGLR+T +++ LAG+ NK +++ + A+G+ DG+ V Sbjct: 63 NGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVK 111 >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 Score = 85.3 bits (210), Expect = 5e-18 Identities = 23/146 (15%), Positives = 41/146 (28%), Gaps = 31/146 (21%) Query: 25 NETIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76 + +VV GG+ + D S + L K ++ HG GPQ+G +L + Sbjct: 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ 61 Query: 77 MGIKSKFENGLRITDQQTAEVVEMV-----------------------LAGSINKKIVSL 113 +N D A + + + Sbjct: 62 QQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADE 121 Query: 114 INQTGTQAIGICGKDGNMVFAEKARH 139 + T+ IG + A +A Sbjct: 122 AFKNPTKPIGPFLTEAEAKEAMQAGA 147 >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 Score = 81.8 bits (201), Expect = 6e-17 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 23/134 (17%) Query: 25 NETIVVKYGGHVMNCTDLS----------KDFVNDIALLKKSNITPVIVHGGGPQIGAVL 74 + +V+ GG+ + + IA + VI HG GPQ+G++L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 75 EKMGIKSKFENGLRITDQQTAEVVEMVL-------------AGSINKKIVSLINQTGTQA 121 M + + + + KK+V++I QT Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121 Query: 122 IGICGKDGNMVFAE 135 ++ Sbjct: 122 NDPAFQNPTKPVGP 135 >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 Score = 71.3 bits (174), Expect = 8e-14 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 25 NETIVVKYGGHVMNCTD-----LSKDFVNDIA--LLKKSNITPVIVHGGGPQIGAVLEKM 77 + I++K GG V+ D + +D + IA + S + +IVHG G + Sbjct: 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLMIVHGAGSFGHPFAGEY 61 Query: 78 GIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKA 137 I S+ EN + ++ + +N + + G A+ + A + Sbjct: 62 RIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRI 121 Query: 138 RH 139 H Sbjct: 122 SH 123 >1b7b_A Carbamate kinase; phosphotransferase, arginine catabolism, ATP synthesys, acylphosphate-making enzymes, open alpha/beta sheet; 2.80A {Enterococcus faecium} SCOP: c.73.1.1 Length = 310 Score = 68.5 bits (166), Expect = 6e-13 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 8/115 (6%) Query: 25 NETIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEK 76 + +VV GG+ + D S + L K ++ HG GPQ+G +L + Sbjct: 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ 61 Query: 77 MGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNM 131 +N D A + N L + + + Sbjct: 62 QQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVV 116 >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 Score = 64.8 bits (157), Expect = 8e-12 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 16/119 (13%) Query: 28 IVVKYGGHVMNCTD----LSKDFVNDIA----------LLKKSNITPVIVHGGGPQIGAV 73 ++K GG +++ + + D + IA + I ++VHGGG G Sbjct: 9 TILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGG-AFGHP 67 Query: 74 LEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMV 132 + K +K + + I ++ ++ + N I+ + A+ I + Sbjct: 68 VAKKYLKIEDGKKIFINMEKGFWEIQRAM-RRFNNIIIDTLQSYDIPAVSIQPSSFVVF 125 >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* Length = 286 Score = 62.9 bits (152), Expect = 3e-11 Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 20/124 (16%) Query: 17 LPFVQFYENETIVVKYGGHVMNCTDLS--------KDFVNDIALLKKSNITPVIV-HGGG 67 +P + + +K GG + + D F + A L ++ +++ GGG Sbjct: 15 VPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGG 74 Query: 68 PQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGK 127 + F + + K+ + G A + Sbjct: 75 AFGHGAIRDHDSTHAF-----------SLAGLTEATFEVKKRWAEKLRGIGVDAFPLQLA 123 Query: 128 DGNM 131 Sbjct: 124 AMCT 127 >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 Score = 61.2 bits (148), Expect = 8e-11 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 10/121 (8%) Query: 28 IVVKYGGHVMNCTDLSKDFVND-----IALLKKSNITPVIVHGGGPQIGAVLEKMGIKSK 82 +++K GG V+ + + +L +VHGGG + G+ Sbjct: 6 MILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGP 65 Query: 83 FENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARHSLR 142 I + +++ ++ + + G + I + +R Sbjct: 66 KNPRSSIGY-----SIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDGRFDYTPLIR 120 Query: 143 L 143 Sbjct: 121 Y 121 >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 Score = 47.7 bits (113), Expect = 1e-06 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 9/112 (8%) Query: 26 ETIVVKYGGHVM--NCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKF 83 + V+K GG + V++I +K++ +I G G L + Sbjct: 37 DATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHK-LLIGTGAGT-RARHLYSIAAGLGL 94 Query: 84 ENGLRITDQQTAEVVEMV---LAGSINKKIVSLINQTGTQAIGICGKDGNMV 132 G+ Q + V + L + K + ++ G A+ + + N V Sbjct: 95 PAGVL--AQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAV 144 >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 Score = 42.0 bits (98), Expect = 5e-05 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 10/106 (9%) Query: 26 ETIVVKYGGHVM-NCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFE 84 VVK GG VM D V ++ L + +I+ G G + + + Sbjct: 40 WLQVVKIGGRVMDRGADAILPLVEELRKLLPEHR-LLILTGAGVRA-----RHVFSVGLD 93 Query: 85 NGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGN 130 GL + E G I + +++ G + Sbjct: 94 LGLPVGSLAPLAASEAGQNGHI---LAAMLASEGVSYVEHPTVADQ 136 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 35.3 bits (81), Expect = 0.006 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 20/72 (27%) Query: 49 DIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSI-N 107 DI + N+T +H GG E G RI + +A + E ++ G + Sbjct: 1663 DIVINNPVNLT---IHFGG----------------EKGKRIRENYSAMIFETIVDGKLKT 1703 Query: 108 KKIVSLINQTGT 119 +KI IN+ T Sbjct: 1704 EKIFKEINEHST 1715 >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 1g0u_G 1fnt_A 1z7q_A 2zcy_G* 3bdm_G* Length = 243 Score = 33.6 bits (76), Expect = 0.017 Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 114 INQTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 NQT ++ + GKD +V ++K L P T Sbjct: 26 TNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVS 61 >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 Score = 31.6 bits (70), Expect = 0.086 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 8/118 (6%) Query: 27 TIVVKYGGHVMN-----CTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81 IVVK G HV++ + K+ V +A L + ++V I A K+ I Sbjct: 3 RIVVKVGSHVISEENTLSFERLKNLVAFLAKLME-KYEVILVTSAA--ISAGHTKLDIDR 59 Query: 82 KFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQAIGICGKDGNMVFAEKARH 139 K ++ + V + K T K Sbjct: 60 KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMM 117 >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 Score = 30.3 bits (67), Expect = 0.21 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%) Query: 28 IVVKYGGHVMNCTDLS--KDFVNDIALLKKSNITPVIVHGGG 67 I++K G + ++ I L + IV GGG Sbjct: 3 IILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGG 44 >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 246 Score = 29.9 bits (67), Expect = 0.21 Identities = 10/36 (27%), Positives = 17/36 (47%) Query: 114 INQTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 INQ G ++ + GKD ++ +K L +T Sbjct: 32 INQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVT 67 >2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152 Score = 29.6 bits (65), Expect = 0.31 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 43 SKDFVNDIALLK-------KSNITPVIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTA 95 KD+ +D+ LL+ + + + P++G+ E G S Sbjct: 3 GKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEI 62 Query: 96 EVVEM 100 + V++ Sbjct: 63 QCVQL 67 >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* Length = 367 Score = 29.3 bits (65), Expect = 0.42 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 27 TIVVKYGGHVMNCTDLS------KDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIK 80 T+VVK G V+ + V A L + VIV G I A E +G Sbjct: 6 TLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGREHLGYP 63 Query: 81 SK 82 Sbjct: 64 EL 65 >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 263 Score = 28.8 bits (64), Expect = 0.51 Identities = 7/32 (21%), Positives = 13/32 (40%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTK 148 G+ +G+ K ++ A K S + K Sbjct: 31 QGSATVGLKSKTHAVLVALKRAQSELAAHQKK 62 >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3bdm_E* 1z7q_F 1fnt_F* 2zcy_E* 1g0u_E Length = 233 Score = 28.9 bits (64), Expect = 0.51 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G+ +G+ ++ A K R++ LS KK Sbjct: 30 QGSVTVGLRSNTHAVLVALK-RNADELSSYQKK 61 >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233 Score = 28.6 bits (63), Expect = 0.65 Identities = 7/33 (21%), Positives = 18/33 (54%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G+ A+G+ +G ++ ++K S + N+ + Sbjct: 33 KGSTALGMKFANGVLLISDKKVRSRLIEQNSIE 65 >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.73.1.3 Length = 219 Score = 28.3 bits (62), Expect = 0.68 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 28 IVVKYGGH-VMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66 +V+ GG + N ++ ++F I + + N V+V GG Sbjct: 3 VVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGG 42 >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 233 Score = 28.4 bits (63), Expect = 0.75 Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G ++GI +G ++ EK + S+ + Sbjct: 29 AGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 62 >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 Score = 28.4 bits (62), Expect = 0.78 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 28 IVVKYGGHVMNCTDLSKDFV----NDIALLKKSNITPVIVHGGGPQ 69 IV GG V+ + DF+ + + + + V+V GG Sbjct: 22 IVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLA 67 >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 254 Score = 28.0 bits (62), Expect = 0.87 Identities = 11/33 (33%), Positives = 14/33 (42%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 + AIGI KDG + EK S + K Sbjct: 32 NSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNK 64 >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* Length = 250 Score = 27.8 bits (61), Expect = 0.97 Identities = 8/33 (24%), Positives = 13/33 (39%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G ++GI +G ++ EK S T Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 Score = 27.8 bits (61), Expect = 1.2 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%) Query: 3 EKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVI 62 K+ + + L PF+ FY++ ++ G LS A +K S + P I Sbjct: 117 TKVVETMEQALLTGTPFLFFYDSGGARIQEG-----IDSLSGYGKMFFANVKLSGVVPQI 171 Query: 63 VHGGGPQIGAV 73 GP G Sbjct: 172 AIIAGPCAGGA 182 >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246 Score = 27.6 bits (61), Expect = 1.3 Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 G AIGI K+G ++ A+K S L +T + Sbjct: 33 RGATAIGIKCKEGVILIADKRVGSKLLEKDTIE 65 >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 Score = 27.5 bits (60), Expect = 1.3 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 116 QTGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149 +TGT +GI KD ++ E+ + + N KK Sbjct: 6 ETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKK 41 >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3bdm_B* 1z7q_C* 2zcy_B* 1g0u_B 1fnt_C Length = 244 Score = 27.4 bits (60), Expect = 1.4 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEKARHS--LRLSPNTKK 149 AIGI DG ++ AE+ S L +T+K Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK 64 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Length = 96 Score = 27.2 bits (60), Expect = 1.5 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%) Query: 72 AVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGS 105 VLE + +TD ++V+ + GS Sbjct: 65 KVLEAGFCIERVGERWVVTDA--GKIVDKIRGGS 96 >3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen, virulence factor, cytoplasm, hydrolase, nucleus, protease; HET: GDT; 2.70A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G Length = 287 Score = 27.3 bits (60), Expect = 1.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147 + GT +IGI DG + EK S L P Sbjct: 31 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK 62 >3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 466 Score = 27.2 bits (60), Expect = 1.6 Identities = 4/24 (16%), Positives = 12/24 (50%) Query: 87 LRITDQQTAEVVEMVLAGSINKKI 110 R++ + A +V + G + ++ Sbjct: 357 TRLSPEGLARLVGLFERGEVTSRV 380 >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 Score = 27.1 bits (59), Expect = 1.7 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 28 IVVKYGGHVMNCTDLS------KDFVNDIALLKKSNITPVIVHGG-GPQIGAVLEKMGIK 80 +++K GG + + IA + + + +V GG GA L+++G++ Sbjct: 53 VLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGME 112 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Length = 741 Score = 27.2 bits (59), Expect = 1.7 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Query: 21 QFYENETIVV--KYGGHVMNCTDLSKDFVNDIALLK 54 + E E ++ Y + + + + D+AL+K Sbjct: 521 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIK 556 >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 1g0u_F Length = 244 Score = 26.9 bits (59), Expect = 1.8 Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147 + GT +IGI DG + EK S L P Sbjct: 28 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK 59 >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 241 Score = 26.8 bits (59), Expect = 1.8 Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNT 147 + G+ AIGI +G + EK S + P++ Sbjct: 32 KLGSTAIGIQTSEGVCLAVEKRITSPLMEPSS 63 >3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* Length = 763 Score = 27.1 bits (60), Expect = 1.9 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Query: 27 TIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP-VIVHGGGPQIG-AVLEKMGIKSKFE 84 TI+ H N + L + I +++ GG Q+ V K G+ + F Sbjct: 665 TIISHDDIHYKNMKRI-------HELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDAGFG 717 Query: 85 NGLRITD 91 G + Sbjct: 718 RGSKGIH 724 >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 219 Score = 27.0 bits (59), Expect = 2.0 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149 TGT +G+ + G ++ A+ + SL N + Sbjct: 7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41 >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 219 Score = 26.9 bits (59), Expect = 2.1 Identities = 3/33 (9%), Positives = 6/33 (18%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 I + R + + K Sbjct: 37 KIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKM 69 >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 2z5c_C 3bdm_D* 1z7q_E 1fnt_E* 2zcy_D* 1g0u_D Length = 242 Score = 26.6 bits (58), Expect = 2.4 Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 116 QTGTQAIGICGKDGNMVFAEKARHSLRLSPNTKK 149 + G+ AIGI K+G ++ EK S L ++ + Sbjct: 24 KLGSTAIGIATKEGVVLGVEKRATSPLLESDSIE 57 >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 261 Score = 26.5 bits (58), Expect = 2.5 Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 +GI DG ++ AE+ Sbjct: 30 HAGTCLGILANDGVLLAAER 49 >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Score = 26.2 bits (57), Expect = 2.7 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 15/89 (16%) Query: 28 IVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGL 87 I+V G ++NC ++ L+ P++V G +GL Sbjct: 321 ILVNIFGGIVNCAIIANGITKACRELELK--VPLVVRLEGTN-----VHEAQNILTNSGL 373 Query: 88 RITDQQTAEVVEMVLAGSINKKIVSLINQ 116 IT E + KK V+ + + Sbjct: 374 PITSAVDLE--DAA------KKAVASVTK 394 >1o13_A Probable NIFB protein; structural genomics, TM1816, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A Length = 136 Score = 26.5 bits (58), Expect = 2.9 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 18 PFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKM 77 P+ F + + + N +K+ VIV G G + A E M Sbjct: 37 PYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIAAFEAM 96 Query: 78 GIKSKFENGLRITDQQTAEVVEMVLAGSINK 108 G+K ++ EVV L+G + Sbjct: 97 GVKV-----IKGASGTVEEVVNQYLSGQLKD 122 >1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A Length = 350 Score = 26.3 bits (58), Expect = 3.0 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%) Query: 51 ALLKKSNITPVIVHGGGPQIG---AVLEKM 77 ALLK N V +GG PQ+G L+ Sbjct: 62 ALLKDPNGNVVARNGGVPQLGNLTKHLQVF 91 >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3bdm_C* 1z7q_D 1fnt_D* 2zcy_C* 1g0u_C Length = 241 Score = 26.2 bits (57), Expect = 3.0 Identities = 7/20 (35%), Positives = 13/20 (65%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 GT A+G+ GK+ ++ E+ Sbjct: 27 RGTCAVGVKGKNCVVLGCER 46 >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 248 Score = 26.1 bits (57), Expect = 3.1 Identities = 8/34 (23%), Positives = 16/34 (47%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLRLSPNTKKT 150 G+ A+G+ G+D ++ EK + T + Sbjct: 28 KGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61 >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* Length = 266 Score = 26.2 bits (57), Expect = 3.3 Identities = 6/20 (30%), Positives = 11/20 (55%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 TGT I + +G ++ A+ Sbjct: 40 TGTSVISMKYDNGVIIAADN 59 >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* Length = 233 Score = 25.8 bits (56), Expect = 3.8 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149 TGT I + +G ++ A+ + SL ++ Sbjct: 7 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 41 >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 Score = 25.9 bits (56), Expect = 4.3 Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 1/70 (1%) Query: 3 EKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVI 62 E + + LP + + V + L + I PVI Sbjct: 128 ENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGI-PVI 186 Query: 63 VHGGGPQIGA 72 V G Sbjct: 187 VGIYGTNPAG 196 >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497 Score = 25.7 bits (55), Expect = 4.7 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Query: 21 QFYENETIVV--KYGGHVMNCTDLSKDFVNDIALLK 54 + E E ++ Y + + + + D+AL+K Sbjct: 279 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIK 314 >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* 3gpj_N* 3gpt_N* 3gpw_N* 3hye_N* Length = 205 Score = 25.5 bits (55), Expect = 5.9 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 117 TGTQAIGICGKDGNMVFAEK 136 G + + KDG ++ A+ Sbjct: 8 LGASIMAVTFKDGVILGADS 27 >1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 633 Score = 25.4 bits (55), Expect = 6.1 Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 88 RITDQQTAEVVEMVLAGSINKKIV 111 +TD+ E ++ L G I K+ Sbjct: 521 NVTDEHIREAFQLYLEGKIAKEAF 544 >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 Score = 25.1 bits (54), Expect = 6.2 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Query: 31 KYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKS 81 K G + +DF+N++ + + + G G + L ++GI+ Sbjct: 165 KPNGLGVIRPTEVQDFLNELDIDE--------IPGIGSVLARRLNELGIQK 207 >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Length = 213 Score = 25.0 bits (54), Expect = 6.5 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%) Query: 117 TGTQAIGICGKDGNMVFAEK--ARHSLRLSPNTKK 149 G + I G+D +V ++ + + ++ K Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK 42 >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248 Score = 25.0 bits (54), Expect = 6.5 Identities = 5/26 (19%), Positives = 9/26 (34%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLR 142 + + G + AE SL+ Sbjct: 26 RAKSVVALAYAGGVLFVAENPSRSLQ 51 >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Score = 25.0 bits (54), Expect = 7.4 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 28 IVVKYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGGGPQIGAVLEKMGIKSKFENGL 87 ++V G ++ C ++ + A+ + PV+V G ++G K ++GL Sbjct: 314 VLVNIFGGIVRCDLIADGIIG--AVAEVGVNVPVVVRLEGNN-----AELGAKKLADSGL 366 Query: 88 RITDQQTAEVVEMVLAGSINKKIVSLIN 115 I + + +++V+ + Sbjct: 367 NIIAAKGLT--DAA------QQVVAAVE 386 >3h6i_A Proteasome (alpha subunit) PRCA; binding sites, oxazolidin-2-ONE, crystallography, X-RAY, protease inhibitors; 2.43A {Mycobacterium tuberculosis} PDB: 3h6f_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A Length = 248 Score = 24.9 bits (54), Expect = 8.3 Identities = 5/26 (19%), Positives = 9/26 (34%) Query: 117 TGTQAIGICGKDGNMVFAEKARHSLR 142 + + G + AE SL+ Sbjct: 26 RAKSVVALAYAGGVLFVAENPSRSLQ 51 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.135 0.375 Gapped Lambda K H 0.267 0.0488 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,236,946 Number of extensions: 54930 Number of successful extensions: 297 Number of sequences better than 10.0: 1 Number of HSP's gapped: 276 Number of HSP's successfully gapped: 75 Length of query: 150 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 66 Effective length of database: 3,656,734 Effective search space: 241344444 Effective search space used: 241344444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.4 bits)