BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.393_1
         (150 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.393_1 
          Length = 150

 Score =  307 bits (787), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP 60
           MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP
Sbjct: 1   MTEKIYQFQAEILEQVLPFVQFYENETIVVKYGGHVMNCTDLSKDFVNDIALLKKSNITP 60

Query: 61  VIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQ 120
           VIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQ
Sbjct: 61  VIVHGGGPQIGAVLEKMGIKSKFENGLRITDQQTAEVVEMVLAGSINKKIVSLINQTGTQ 120

Query: 121 AIGICGKDGNMVFAEKARHSLRLSPNTKKT 150
           AIGICGKDGNMVFAEKARHSLRLSPNTKKT
Sbjct: 121 AIGICGKDGNMVFAEKARHSLRLSPNTKKT 150


>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 388

 Score = 26.6 bits (57), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 80  KSKFENGLRITDQQTAEVVEMVLA 103
           K  FEN  RI D + A  V MVLA
Sbjct: 63  KLTFENDTRIVDTEMASSVSMVLA 86


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 24.3 bits (51), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 34  GHVMNCTDLSKDFVND--IALLKKSNITPVIVHG 65
           G V    DL    V +  I+L+++S + P+I+HG
Sbjct: 344 GSVRARQDLKAGIVGEKSISLVERSRVLPLIIHG 377


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 23.1 bits (48), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 50  IALLKKSNITPVIVHGGGPQIGAV 73
           I  LK +N T V V+ GG + GAV
Sbjct: 425 IPFLKVANDTAVAVNQGGKRKGAV 448


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 22.7 bits (47), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 19/81 (23%)

Query: 83   FENGLRITDQQTAEVVEMVLAGSINKKI-VSLINQTG-------TQAIGICGKDGNM--- 131
             EN  ++    T+EVVE+VL  +  + + +SL ++ G        Q +   GK+G +   
Sbjct: 1165 LENRNKLLSSMTSEVVELVLRNNYLQSLAISLESRKGMAMMWNFAQLMKFLGKEGALDRE 1224

Query: 132  --------VFAEKARHSLRLS 144
                     F E+ R  + LS
Sbjct: 1225 LEHLPSVVSFEERIREEVSLS 1245


>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 347

 Score = 22.3 bits (46), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 27 TIVVKYGGHVMNCTDLSK 44
          T+  +Y GHV+   D SK
Sbjct: 49 TLGFRYAGHVLQNPDFSK 66


>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score = 21.9 bits (45), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 88  RITDQQTAEVVEMVLAGSINKKIVSL 113
           +  DQ+    +  V+AG  N+KI S+
Sbjct: 11  KWADQKIKTGIPFVIAGDFNRKINSI 36


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 21.9 bits (45), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 31  KYGGHVMNCTDLSKDFVNDIALLKKSNITPVIVHGG 66
           K GG+ ++     + F+ D A+  K +  P++V  G
Sbjct: 740 KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAG 775


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,285
Number of Sequences: 1233
Number of extensions: 3521
Number of successful extensions: 15
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 328,796
effective HSP length: 67
effective length of query: 83
effective length of database: 246,185
effective search space: 20433355
effective search space used: 20433355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)