HHsearch alignment for GI: peg_394 and conserved domain: cd04239

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.76  E-value=4.2e-18  Score=120.62  Aligned_cols=120  Identities=22%  Similarity=0.239  Sum_probs=97.0

Q ss_pred             EEECHHHHHHHHHCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCC------CCCCCCCH
Q ss_conf             355699999999779849985743178732006614799999998625113343226763353455------55563388
Q 537021.9.peg.3    8 IKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNR------QLISKLSI   81 (142)
Q Consensus         8 ~~vd~~~i~~lL~~g~iPVi~pig~~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~------~~i~~i~~   81 (142)
T Consensus       104 ~~~~~~~~~~~l~~g~ipV~~~~--~--~~~~-~dnD~lAa~vA~~v~AD~lIilTDVDGlY~~dP~~~~~Ak~I~~is~  178 (229)
T cd04239         104 EPYIRRRAIRHLEKGRIVIFGGG--T--GNPG-FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISY  178 (229)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECC--C--CCCC-CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCH
T ss_conf             02239999999853977998365--5--7887-65008999999972998898611238617889887998748771289


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEC
Q ss_conf             899999626976786789999999999849988999525787689999967998663454
Q 537021.9.peg.3   82 NEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLLI  141 (142)
Q Consensus        82 ~e~~~l~~~~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i~  141 (142)
T Consensus       179 ~e~~~-------~g~~~~k~~Aa~~a~~~Gi~-~~I~ng~~~~~i-~~~l~G~~vGTlI~  229 (229)
T cd04239         179 DELLK-------KGLKVMDATALTLCRRNKIP-IIVFNGLKPGNL-LRALKGEHVGTLIE  229 (229)
T ss_pred             HHHHH-------CCCCEECHHHHHHHHHCCCC-EEEECCCCCCHH-HHHHCCCCCCEEEC
T ss_conf             99987-------59874449999999987996-999779993389-99977999981659