HHsearch alignment for GI: peg_394 and conserved domain: cd04240

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.53  E-value=3.6e-14  Score=98.90  Aligned_cols=119  Identities=23%  Similarity=0.441  Sum_probs=96.4

Q ss_pred             HHHHHHHHHCCCEEEECCCCC----CCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHH
Q ss_conf             999999997798499857431----7873200661479999999862511334322676335345555563388899999
Q 537021.9.peg.3   12 RTILDLLIKSGIIPVIAPIAP----GYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQLISKLSINEARTL   87 (142)
Q Consensus        12 ~~~i~~lL~~g~iPVi~pig~----~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~~i~~i~~~e~~~l   87 (142)
T Consensus        81 ~~~~~~~~~~~~~~v~lP~~~l~~~~~lp~sWdvtsDs~a~~~A~~l~a~~li~~~~vdGiy~~~~kl~~~i~~~~l~~-  159 (203)
T cd04240          81 LAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAELLG-  159 (203)
T ss_pred             HHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCHHHHCC-
T ss_conf             4779999733891587115875158988878776618999999997598858998567755187505541158988648-


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf             62697678678999999999984998899952578768999996799866345
Q 537021.9.peg.3   88 IKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL  140 (142)
Q Consensus        88 ~~~~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i  140 (142)
T Consensus       160 ---~~~VD~~~~~~-----~~~~~i~-~~VvnG~~p~~i~~~l~g~~~~GT~I  203 (203)
T cd04240         160 ---ETSVDPAFPRL-----LTKYGIR-CYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             ---CCCHHHHHHHH-----HHHCCCE-EEEECCCCHHHHHHHHCCCCCCCCCC
T ss_conf             ---87410778999-----9976963-99987998799999986898798579