HHsearch results for GI: peg_394 and protein with PDBid: 1ybd_A

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.44  E-value=1.2e-12  Score=89.23  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=90.1

Q ss_pred             EEEECHHHHHHHHHCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCC------CCCCCC
Q ss_conf             13556999999997798499857431787320066147999999986251133432267633534555------556338
Q 537021.9.peg.3    7 VIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQ------LISKLS   80 (142)
Q Consensus         7 v~~vd~~~i~~lL~~g~iPVi~pig~~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~------~i~~i~   80 (142)
                      ...-+...+...++.+.+|+.....     ..-..+.|.+++.+|..++|+.++++||++|+|+.+++      ++..++
T Consensus       112 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~nD~laa~~a~~~~ad~l~i~tdvdGvy~~~P~~~~~a~~~~~~~  186 (239)
T 1ybd_A          112 AETYARPKAIQYLEEGKVVIFAAGT-----GNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETIT  186 (239)
T ss_dssp             CEECCHHHHHHHHHTTCEEEEESTT-----SSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             8887799999986349780257752-----23566652389999988240066526777887378975576654202057


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf             889999962697678678999999999984998899952578768999996799866345
Q 537021.9.peg.3   81 INEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL  140 (142)
Q Consensus        81 ~~e~~~l~~~~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i  140 (142)
                      ..+...   .  -+++|..|  ++.-|.++|++ ++|+||+.|+.| ..+++++.+||+|
T Consensus       187 ~~e~~~---~--g~~~m~~~--Aa~~a~~~gi~-~~I~ng~~~~~i-~~~l~Ge~~GT~I  237 (239)
T 1ybd_A          187 FDEALL---K--NLKVMDAT--AFALCRERKLN-IVVFGIAKEGSL-KRVITGEDEGTLV  237 (239)
T ss_dssp             HHHHHH---T--TCCSSCHH--HHHHHHHTTCC-EEEECTTSTTHH-HHHHHTCSCSEEE
T ss_pred             HHHHHH---C--CCHHHHHH--HHHHHHHCCCC-EEEEECCCCCHH-HHHHCCCCCCCEE
T ss_conf             999975---6--84489999--99999987997-999848996579-9997799997275