HHsearch results for GI: peg_394 and protein with PDBid: 1ybd_A
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.44 E-value=1.2e-12 Score=89.23 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=90.1
Q ss_pred EEEECHHHHHHHHHCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHCCCCCEEECCCC------CCCCCC
Q ss_conf 13556999999997798499857431787320066147999999986251133432267633534555------556338
Q 537021.9.peg.3 7 VIKVNRTILDLLIKSGIIPVIAPIAPGYDGATYNINADTFAGAIAEKLNVIRLLFLTDVPGVLDKNRQ------LISKLS 80 (142)
Q Consensus 7 v~~vd~~~i~~lL~~g~iPVi~pig~~~~G~~~nin~D~~a~~lA~~l~A~kli~ltdv~Gv~d~~~~------~i~~i~ 80 (142)
...-+...+...++.+.+|+..... ..-..+.|.+++.+|..++|+.++++||++|+|+.+++ ++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~nD~laa~~a~~~~ad~l~i~tdvdGvy~~~P~~~~~a~~~~~~~ 186 (239)
T 1ybd_A 112 AETYARPKAIQYLEEGKVVIFAAGT-----GNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETIT 186 (239)
T ss_dssp CEECCHHHHHHHHHTTCEEEEESTT-----SSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 8887799999986349780257752-----23566652389999988240066526777887378975576654202057
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEE
Q ss_conf 889999962697678678999999999984998899952578768999996799866345
Q 537021.9.peg.3 81 INEARTLIKDGTISGGMIPKIETSIKAIENGVKSVAILDGKKPHSILMEIFTKNGSGTLL 140 (142)
Q Consensus 81 ~~e~~~l~~~~~~~~gm~~Ki~~a~~a~~~Gv~~v~i~~~~~~~~ll~elft~~g~GT~i 140 (142)
..+... . -+++|..| ++.-|.++|++ ++|+||+.|+.| ..+++++.+||+|
T Consensus 187 ~~e~~~---~--g~~~m~~~--Aa~~a~~~gi~-~~I~ng~~~~~i-~~~l~Ge~~GT~I 237 (239)
T 1ybd_A 187 FDEALL---K--NLKVMDAT--AFALCRERKLN-IVVFGIAKEGSL-KRVITGEDEGTLV 237 (239)
T ss_dssp HHHHHH---T--TCCSSCHH--HHHHHHHTTCC-EEEECTTSTTHH-HHHHHTCSCSEEE
T ss_pred HHHHHH---C--CCHHHHHH--HHHHHHHCCCC-EEEEECCCCCHH-HHHHCCCCCCCEE
T ss_conf 999975---6--84489999--99999987997-999848996579-9997799997275