RPSBLAST alignment for GI: peg_394 and conserved domain: TIGR00746
>gnl|CDD|162019 TIGR00746, arcC, carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. Length = 310
Score = 37.8 bits (88), Expect = 0.001
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 24/128 (18%)
Query: 17 LLIKSGIIPVIAPIAPG----YDGATYN-----INADTFAGAIAEKLNVIRLLFLTDVPG 67
L+++G+I VI+ G +GA I+ D + +AE++N L+ LTDV
Sbjct: 177 TLVENGVI-VISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDA 235
Query: 68 VL----DKNRQLISKLSINEARTLIKDGTIS-GGMIPKIETSIKAIENGVK--------- 113
V + + + ++++ E K G + G M PK+E +I+ +E+G K
Sbjct: 236 VYINYGKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLEN 295
Query: 114 SVAILDGK 121
+V L+GK
Sbjct: 296 AVEALEGK 303