HHsearch alignment for GI: peg_409 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].

Probab=92.53  E-value=0.11  Score=31.51  Aligned_cols=73  Identities=18%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             HHHHHHHHCCCHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88973235094899998276--88879984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4   11 SETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII   86 (242)
Q Consensus        11 ~~~~~~~~~~~~qq~~a~~~--~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l   86 (242)
T Consensus        80 eELv~llG~--~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~-~La~q~  154 (451)
T COG0541          80 EELVKLLGG--ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK-QLAEQV  154 (451)
T ss_pred             HHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHC
T ss_conf             999998488--876650378998589998156797486899999999974994589850567868999999-999860