HHsearch alignment for GI: peg_409 and conserved domain: COG4098

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].

Probab=95.40  E-value=0.021  Score=36.62  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             768887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4   29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA   88 (242)
Q Consensus        29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~   88 (242)
T Consensus       114 ~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~  170 (441)
T COG4098         114 KQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSN  170 (441)
T ss_pred             HHCCCEEEEEECCCCCHHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             7157689997427985101699999999659---86998468610117778999976214