HHsearch alignment for GI: peg_409 and conserved domain: COG4962
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=94.25 E-value=0.033 Score=35.27 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=26.9
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8276888799848889967999999999982478988956677687
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
T Consensus 169 av~~r~NILisGGTGSGKTTlLNa-l~~~i~~~---eRvItiEDta 210 (355)
T COG4962 169 AVGIRCNILISGGTGSGKTTLLNA-LSGFIDSD---ERVITIEDTA 210 (355)
T ss_pred HHHHCEEEEEECCCCCCHHHHHHH-HHHCCCCC---CEEEEEEEHH
T ss_conf 986201599967878879999999-97157976---5089981236