HHsearch alignment for GI: peg_409 and conserved domain: COG4962

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=94.25  E-value=0.033  Score=35.27  Aligned_cols=42  Identities=21%  Similarity=0.319  Sum_probs=26.9

Q ss_pred             HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             8276888799848889967999999999982478988956677687
Q 537021.9.peg.4   27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK   72 (242)
Q Consensus        27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~   72 (242)
T Consensus       169 av~~r~NILisGGTGSGKTTlLNa-l~~~i~~~---eRvItiEDta  210 (355)
T COG4962         169 AVGIRCNILISGGTGSGKTTLLNA-LSGFIDSD---ERVITIEDTA  210 (355)
T ss_pred             HHHHCEEEEEECCCCCCHHHHHHH-HHHCCCCC---CEEEEEEEHH
T ss_conf             986201599967878879999999-97157976---5089981236