HHsearch alignment for GI: peg_409 and conserved domain: COG5008
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=92.21 E-value=0.12 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=28.1
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999827688879984888996799999999998
Q 537021.9.peg.4 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 23 qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
T Consensus 119 lk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN 152 (375)
T COG5008 119 LKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRN 152 (375)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCC
T ss_conf 9975204374599987788884016899860134