HHsearch alignment for GI: peg_409 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=95.75 E-value=0.0056 Score=40.70 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888-7998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
T Consensus 30 p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g---~~~~~~~~ee~~-~~~~~~~ 79 (241)
T PRK06067 30 PFGSLILIEGENDTGKSVLSQQFVWGALNQG---KRGLAITTENTS-KSYLKQM 79 (241)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCH-HHHHHHH
T ss_conf 7990899980799887999999999998679---829999942899-9999999