HHsearch alignment for GI: peg_409 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=94.56 E-value=0.02 Score=36.79 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888-799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 29 DPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 29 ~~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
T Consensus 21 ip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g---~~~~yis~e~-t~~~~i~q 70 (230)
T PRK08533 21 IPFGSIILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSSQL-TTTEFIKQ 70 (230)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECC-CHHHHHHH
T ss_conf 88984899986899878999999999998789---8699999438-99999999