HHsearch alignment for GI: peg_409 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=99.93 E-value=6.6e-26 Score=201.95 Aligned_cols=103 Identities=33% Similarity=0.389 Sum_probs=85.1
Q ss_pred HHHHHHHHH--HCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888897323--50948999982-7688879984888996799999999998247-8988956677687899999999999
Q 537021.9.peg.4 9 EHSETIDLI--SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 9 ~~~~~~~~~--~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
T Consensus 184 ~~~~fF~~~es~PLn~~Qr~Avi~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~ 263 (684)
T PRK11054 184 EWADFFSQVESSPLNPSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRE 263 (684)
T ss_pred HHHHHHHHHCCCCCCHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHH
T ss_conf 99999887417999989995727479964898338997077999999999975999866778686349999999999997
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9677521674221464997314799978999999999999831001321117999987555428975
Q 537021.9.peg.4 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 (242)
Q Consensus 85 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~ 151 (242)
T Consensus 264 ~lg~----------------------------------------~~v~~~TFHSlal~ILr~~~~~~ 290 (684)
T PRK11054 264 RLGT----------------------------------------EDITARTFHALALHIIQQGSKKV 290 (684)
T ss_pred HCCC----------------------------------------CCEEEEEHHHHHHHHHHHHCCCC
T ss_conf 5499----------------------------------------98378659999999999844457