HHsearch alignment for GI: peg_409 and conserved domain: PRK11608

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.

Probab=90.24  E-value=0.35  Score=28.10  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             489999827688879984888996799999999998
Q 537021.9.peg.4   21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL   56 (242)
Q Consensus        21 ~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll   56 (242)
T Consensus        19 ~~~~~~~A~~~~pVLI~GE~GtGK~~~--Ar~IH~~   52 (325)
T PRK11608         19 LEQVSHLAPLDKPVLIIGERGTGKELI--ASRLHYL   52 (325)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCHHHH--HHHHHHC
T ss_conf             999999968899989889898379999--9999965