HHsearch alignment for GI: peg_409 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.33 E-value=0.12 Score=31.22 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHHH---HHHHHHHHHHH
Q ss_conf 88879984888996799999999998-247898895667---76878999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL---THTKAAAAEMS 79 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~l---TFT~kAA~El~ 79 (242)
T Consensus 348 gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~--~valit~DtyRiga~eQL~ 398 (557)
T PRK12727 348 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPR--DVALVTTDTQRVGGREQLH 398 (557)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHH
T ss_conf 76478743777673117999999999973998--1899972664087999999