HHsearch alignment for GI: peg_409 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=92.69 E-value=0.17 Score=30.20 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999982-7688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 23 EQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 23 qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
T Consensus 43 Lrr~i~~~~~~S~Il~GPPGtGKTT-LA~iIA~~t~~-----~F~~lsAv~sgvkdlr~ii~ 98 (726)
T PRK13341 43 LRRAIKADRVGSLILYGPPGVGKTT-LARIIANHTRA-----HFSSLNAVLAGVKDLRAEVD 98 (726)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHCC-----CEEEEECCCCCHHHHHHHHH
T ss_conf 9999976999827888979999999-99999887488-----67998562037799999999