HHsearch alignment for GI: peg_409 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=95.25 E-value=0.28 Score=28.70 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
T Consensus 35 ~~~~s~Il~GPPG~GKTTl-A~iiA~~~~~--~---f~~lnA~~~gv~dir~ii~~ 84 (417)
T PRK13342 35 GRLSSMILWGPPGTGKTTL-ARIIAGATDA--E---FEALSAVTSGVKDLREVIEE 84 (417)
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHHCC--C---EEEEECCCCCHHHHHHHHHH
T ss_conf 9997599889699989999-9999998689--8---89961410388999999999