HHsearch alignment for GI: peg_409 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=95.25  E-value=0.28  Score=28.70  Aligned_cols=50  Identities=16%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4   29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE   84 (242)
Q Consensus        29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~   84 (242)
T Consensus        35 ~~~~s~Il~GPPG~GKTTl-A~iiA~~~~~--~---f~~lnA~~~gv~dir~ii~~   84 (417)
T PRK13342         35 GRLSSMILWGPPGTGKTTL-ARIIAGATDA--E---FEALSAVTSGVKDLREVIEE   84 (417)
T ss_pred             CCCCEEEEECCCCCCHHHH-HHHHHHHHCC--C---EEEEECCCCCHHHHHHHHHH
T ss_conf             9997599889699989999-9999998689--8---89961410388999999999