HHsearch alignment for GI: peg_409 and conserved domain: PRK13709
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional.
Probab=97.16 E-value=0.00062 Score=47.44 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=48.1
Q ss_pred HHHCCCHHHHHHH-----CCCCCEEEEECCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982-----7688879984888996799999999998---2478988956677687899999999
Q 537021.9.peg.4 16 LISQTKSEQLLAS-----DPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 16 ~~~~~~~qq~~a~-----~~~~~~lV~A~aGSGKT~tL~~rv~~ll---~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
T Consensus 965 ~l~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~a-vi~ai~tl~~~~rp-qViGLAPTH~AV~EL~~~ 1036 (1756)
T PRK13709 965 LMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERP-RVVGLGPTHRAVGEMRSA 1036 (1756)
T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHHHHHHCCCCCCC-CEEEECCHHHHHHHHHHC
T ss_conf 6635785778777563247872599870355666778999-99999725513587-267567517899999964