HHsearch alignment for GI: peg_409 and conserved domain: PRK13909

>PRK13909 putative recombination protein RecB; Provisional.
Probab=99.96  E-value=1.3e-28  Score=220.98  Aligned_cols=127  Identities=31%  Similarity=0.460  Sum_probs=102.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf             79984888996799999999998247898895667768789999999999996775216742214649973147999789
Q 537021.9.peg.4   34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD  113 (242)
Q Consensus        34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  113 (242)
T Consensus         1 l~i~AsAGSGKT~~L~~R~l~Ll~~g~~p~~ILavTFT~kAA~EMk~RI~~~L~~l~~~~~~~~~~~~~~~~~~~-~~~~   79 (911)
T PRK13909          1 LALKASAGSGKTFALSVRFLALLFKGANPNEILALTFTKKAANEMKERIIDTLLNLEKENKESELNELEEELGLS-KEEL   79 (911)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHH
T ss_conf             979976704499999999999973897924487855688999999999999998663054305899999870899-8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             99999999999831001321117999987555428975889998516837
Q 537021.9.peg.4  114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE  163 (242)
Q Consensus       114 ~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~  163 (242)
T Consensus        80 ~~~~~~~~~~~l~--~~~~I~TIhsFc~~ilr~~~~~~gl~~~f~i~~~~  127 (911)
T PRK13909         80 LNKRDKVYERFLN--SELKISTIDAFFQKILRKFCLNLGLSPDFEVTSSH  127 (911)
T ss_pred             HHHHHHHHHHHHC--CCCEEEEHHHHHHHHHHHHHHHHCCCCCCEECCCH
T ss_conf             9999999997514--79869769999999999789982969997557118