HHsearch alignment for GI: peg_409 and conserved domain: TIGR00376

>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.

Probab=96.07  E-value=0.0082  Score=39.52  Aligned_cols=69  Identities=17%  Similarity=0.226  Sum_probs=55.5

Q ss_pred             HCCCHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             509489999827----6888799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4   18 SQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT   87 (242)
Q Consensus        18 ~~~~~qq~~a~~----~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~   87 (242)
T Consensus       201 ~~l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~~~~~~~~~~p  273 (709)
T TIGR00376       201 PNLNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-PEERVLVTAPSNIAVDNLLERLAPLYP  273 (709)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             2322346777654312344168726777762156899999998528-533067623531037788888764145