HHsearch alignment for GI: peg_409 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.62 E-value=5.1e-08 Score=76.13 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=72.5
Q ss_pred HHHHHHHC--CCCC-EEEEECCCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999827--6888-799848889967999999999982----4789889566776878999999999999677521674
Q 537021.9.peg.4 22 SEQLLASD--PTRS-AWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 (242)
Q Consensus 22 ~qq~~a~~--~~~~-~lV~A~aGSGKT~tL~~rv~~ll~----~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~ 94 (242)
T Consensus 230 D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~ 309 (753)
T TIGR01447 230 DWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENM 309 (753)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999986087689987988977899999999999989864997404788668447999999999988632234236
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---CCCCCCCCCCCCHHH
Q ss_conf 22146499731479997899999999999983100132111799998755--542897---588999851683789
Q 537021.9.peg.4 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM--QQFPLE---ANITSHFAIADEEQS 165 (242)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~il--r~~~~~---~gl~~~f~i~d~~~~ 165 (242)
T Consensus 310 -aid~~-------------------~-----~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSM 360 (753)
T TIGR01447 310 -AIDED-------------------L-----IAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASM 360 (753)
T ss_pred -CCCHH-------------------H-----HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHH
T ss_conf -65879-------------------8-----548720456888861661478767767777889855278706002