HHsearch alignment for GI: peg_409 and conserved domain: TIGR01447

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.62  E-value=5.1e-08  Score=76.13  Aligned_cols=119  Identities=15%  Similarity=0.136  Sum_probs=72.5

Q ss_pred             HHHHHHHC--CCCC-EEEEECCCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             89999827--6888-799848889967999999999982----4789889566776878999999999999677521674
Q 537021.9.peg.4   22 SEQLLASD--PTRS-AWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD   94 (242)
Q Consensus        22 ~qq~~a~~--~~~~-~lV~A~aGSGKT~tL~~rv~~ll~----~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~   94 (242)
T Consensus       230 D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~  309 (753)
T TIGR01447       230 DWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENM  309 (753)
T ss_pred             HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             79999999986087689987988977899999999999989864997404788668447999999999988632234236


Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---CCCCCCCCCCCCHHH
Q ss_conf             22146499731479997899999999999983100132111799998755--542897---588999851683789
Q 537021.9.peg.4   95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM--QQFPLE---ANITSHFAIADEEQS  165 (242)
Q Consensus        95 ~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~il--r~~~~~---~gl~~~f~i~d~~~~  165 (242)
T Consensus       310 -aid~~-------------------~-----~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSM  360 (753)
T TIGR01447       310 -AIDED-------------------L-----IAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASM  360 (753)
T ss_pred             -CCCHH-------------------H-----HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHH
T ss_conf             -65879-------------------8-----548720456888861661478767767777889855278706002