HHsearch alignment for GI: peg_409 and conserved domain: TIGR01587

>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=95.63  E-value=0.021  Score=36.71  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHCCCCCC-CHHH---
Q ss_conf             799848889967999999999---982478988956677687899999999999----9677--52167422-1464---
Q 537021.9.peg.4   34 AWVSANAGSGKTHILVQRVLR---LLLANAHPSTLLCLTHTKAAAAEMSHRVLE----IITA--WSHLSDEI-LSAE---  100 (242)
Q Consensus        34 ~lV~A~aGSGKT~tL~~rv~~---ll~~g~~P~~IL~lTFT~kAA~El~~RI~~----~l~~--~~~~~~~~-~~~~---  100 (242)
T Consensus         2 ~v~~APTG~GKTe~aL~~A~~sah~~k~~-~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~ssrfnh~~~~   80 (424)
T TIGR01587         2 LVIEAPTGYGKTEAALLWALKSAHLIKKQ-KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHSSRFNHLASS   80 (424)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHH-HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf             68861789987899999998636664224-44010122026888999999999867754178543233455226789999


Q ss_pred             -HHHHHCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -99731479997899999999999--98310013211179999875554
Q 537021.9.peg.4  101 -ITKIQGKKPNKSDMSKARHLLIT--ILETPGGLKVQTIHAFCEAIMQQ  146 (242)
Q Consensus       101 -l~~~~~~~~~~~~~~~~~~ll~~--~l~~~~~~~i~Ti~~f~~~ilr~  146 (242)
T Consensus        81 ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~  129 (424)
T TIGR01587        81 IKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGE  129 (424)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECC
T ss_conf             9987763047827999999852242121013178853412200000055