HHsearch alignment for GI: peg_409 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=95.63 E-value=0.021 Score=36.71 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=69.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHCCCCCC-CHHH---
Q ss_conf 799848889967999999999---982478988956677687899999999999----9677--52167422-1464---
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLR---LLLANAHPSTLLCLTHTKAAAAEMSHRVLE----IITA--WSHLSDEI-LSAE--- 100 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~---ll~~g~~P~~IL~lTFT~kAA~El~~RI~~----~l~~--~~~~~~~~-~~~~--- 100 (242)
T Consensus 2 ~v~~APTG~GKTe~aL~~A~~sah~~k~~-~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~ssrfnh~~~~ 80 (424)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALKSAHLIKKQ-KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHSSRFNHLASS 80 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH-HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 68861789987899999998636664224-44010122026888999999999867754178543233455226789999
Q ss_pred -HHHHHCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99731479997899999999999--98310013211179999875554
Q 537021.9.peg.4 101 -ITKIQGKKPNKSDMSKARHLLIT--ILETPGGLKVQTIHAFCEAIMQQ 146 (242)
Q Consensus 101 -l~~~~~~~~~~~~~~~~~~ll~~--~l~~~~~~~i~Ti~~f~~~ilr~ 146 (242)
T Consensus 81 ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ 129 (424)
T TIGR01587 81 IKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGE 129 (424)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECC
T ss_conf 9987763047827999999852242121013178853412200000055