HHsearch alignment for GI: peg_409 and conserved domain: TIGR02546

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=90.25  E-value=0.2  Score=29.76  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=17.5

Q ss_pred             CCCEEEEECCCCCHHHHHHHHH
Q ss_conf             8887998488899679999999
Q 537021.9.peg.4   31 TRSAWVSANAGSGKTHILVQRV   52 (242)
Q Consensus        31 ~~~~lV~A~aGSGKT~tL~~rv   52 (242)
T Consensus       153 GQRiGIFA~aG~GKSTLL~~i~  174 (430)
T TIGR02546       153 GQRIGIFAGAGVGKSTLLGMIA  174 (430)
T ss_pred             CCEEEEEECCCCCHHHHHHHHH
T ss_conf             5305787088861668999986