HHsearch alignment for GI: peg_409 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.

Probab=96.01  E-value=0.02  Score=36.88  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             HHHCCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             982768887-9984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4   26 LASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW   89 (242)
Q Consensus        26 ~a~~~~~~~-lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~   89 (242)
T Consensus         8 ~~~~~~~~~ivitAPTgsGKT~Aa~l---p~l~~~---~~~lyi~P~kAL~~Dq~~~l~~~~~~~   66 (357)
T TIGR03158         8 ALQSKDADIIFNTAPTGAGKTLAWLT---PLLHGE---NDTIALYPTNALIEDQTEAIKEFVDVF   66 (357)
T ss_pred             HHHCCCCCEEEEECCCCCCHHHHHHH---HHHHCC---CCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             99768998699989998569999999---997389---879997778999999999999999874