HHsearch alignment for GI: peg_409 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.10 E-value=0.32 Score=28.33 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982-47898895667768789999999999996
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
T Consensus 30 GeL~viaarpg~GKT~f~~~~a~~~~~~~g~---~vl~~Sl-Em~~~~~~~Rlls~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGV---RVGTISL-EEPVVRTARRLLGQY 82 (271)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEEEC-CCCHHHHHHHHHHHH
T ss_conf 8089999689986999999999999997699---0899970-499999999999998