HHsearch alignment for GI: peg_409 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.95 E-value=0.6 Score=26.43 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=19.1
Q ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHH
Q ss_conf 68887-998488899679999999999
Q 537021.9.peg.4 30 PTRSA-WVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 30 ~~~~~-lV~A~aGSGKT~tL~~rv~~l 55 (242)
T Consensus 17 ~~G~itEi~G~~GsGKTql~lqla~~~ 43 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 478799999999984999999999998