HHsearch alignment for GI: peg_409 and conserved domain: cd01126

>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.94  E-value=0.037  Score=34.89  Aligned_cols=24  Identities=33%  Similarity=0.209  Sum_probs=18.0

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             87998488899679999999999824
Q 537021.9.peg.4   33 SAWVSANAGSGKTHILVQRVLRLLLA   58 (242)
Q Consensus        33 ~~lV~A~aGSGKT~tL~~rv~~ll~~   58 (242)
T Consensus         1 H~lvig~tGsGKt~~~v--ip~ll~~   24 (384)
T cd01126           1 HVLVFAPTRSGKGVGFV--IPNLLTW   24 (384)
T ss_pred             CEEEECCCCCCHHHHHH--HHHHHHC
T ss_conf             97998899997318999--9999818