HHsearch alignment for GI: peg_409 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.94 E-value=0.037 Score=34.89 Aligned_cols=24 Identities=33% Similarity=0.209 Sum_probs=18.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 87998488899679999999999824
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
T Consensus 1 H~lvig~tGsGKt~~~v--ip~ll~~ 24 (384)
T cd01126 1 HVLVFAPTRSGKGVGFV--IPNLLTW 24 (384)
T ss_pred CEEEECCCCCCHHHHHH--HHHHHHC
T ss_conf 97998899997318999--9999818