HHsearch alignment for GI: peg_409 and conserved domain: cd01128

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

Probab=91.43  E-value=0.24  Score=29.26  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=17.7

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             888799848889967999999999
Q 537021.9.peg.4   31 TRSAWVSANAGSGKTHILVQRVLR   54 (242)
Q Consensus        31 ~~~~lV~A~aGSGKT~tL~~rv~~   54 (242)
T Consensus        16 GQR~gI~g~~gvGKT~Ll~~-i~~   38 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQS-IAN   38 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHH-HHH
T ss_conf             86778878999889999999-999