HHsearch alignment for GI: peg_409 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.33 E-value=0.02 Score=36.87 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=21.6
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 276888799848889967999999999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ 54 (242)
T Consensus 22 v~~~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 985998999899999899999999961