HHsearch alignment for GI: peg_409 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=97.32 E-value=0.00031 Score=49.50 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 68887998488899679999999999824789889566776878999999999999677521674221464997314799
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~ 109 (242)
T Consensus 13 ~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~-~-------~~g--- 81 (167)
T pfam00270 13 EGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA-L-------LYG--- 81 (167)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE-E-------ECC---
T ss_conf 69978998899975899999999999874778987999906088888999886432102676404-6-------417---
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 97899999999999983100132111799998755542897588999851683789
Q 537021.9.peg.4 110 NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 (242)
Q Consensus 110 ~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~ 165 (242)
T Consensus 82 ~~~~~~~~-----~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~-~~~~lIvDE~H~ 130 (167)
T pfam00270 82 GDSPKEQL-----RKLKKGPDILVGTPGRLLDLLERGGL-LLK-NLKLLVLDEAHR 130 (167)
T ss_pred CCCHHHHH-----HHHCCCCCEEEECHHHHHHHHHHCCC-CCC-CEEEEEEECHHH
T ss_conf 86178898-----76405770799478999999980331-211-003899880886