HHsearch alignment for GI: peg_409 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=99.96 E-value=4.1e-29 Score=224.53 Aligned_cols=119 Identities=31% Similarity=0.489 Sum_probs=101.3
Q ss_pred CCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 948999982-76888799848889967999999999982-4789889566776878999999999999677521674221
Q 537021.9.peg.4 20 TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 (242)
Q Consensus 20 ~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~ 97 (242)
T Consensus 1 Ln~~Q~~av~~~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~~-------- 72 (494)
T pfam00580 1 LNPEQRKAVTHLGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKA-------- 72 (494)
T ss_pred CCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCCC--------
T ss_conf 998899998099999799971870689999999999998189997478767028999999999999873834--------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4649973147999789999999999998310013211179999875554289758-89998516837899999999999
Q 537021.9.peg.4 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKS 175 (242)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~g-l~~~f~i~d~~~~~~l~~~~~~~ 175 (242)
T Consensus 73 -----------------------------~~~~~~i~T~Hsf~~~iLr~~~~~~g~~~~~f~i~d~~~~~~~~~~~~~~ 122 (494)
T pfam00580 73 -----------------------------EASELNISTFHSFCLRILRKYANRIGDLLPNFSILDELDQLALLKEILKK 122 (494)
T ss_pred -----------------------------CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -----------------------------46886785499999999999899837777788216678899999999987