HHsearch alignment for GI: peg_409 and conserved domain: pfam02534

>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.

Probab=91.50  E-value=0.069  Score=33.04  Aligned_cols=28  Identities=36%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             HCCC-CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             2768-88799848889967999999999982
Q 537021.9.peg.4   28 SDPT-RSAWVSANAGSGKTHILVQRVLRLLL   57 (242)
Q Consensus        28 ~~~~-~~~lV~A~aGSGKT~tL~~rv~~ll~   57 (242)
T Consensus        40 ~~~~~~H~lviaptgsGKt~~~V--iPnLl~   68 (468)
T pfam02534        40 TDGDFSHVLVFAGTGSGKGVGVV--IPNLLV   68 (468)
T ss_pred             ECCCCCEEEEECCCCCCCCCCCH--HHHHHH
T ss_conf             17997679998489997234242--988851