HHsearch alignment for GI: peg_409 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.23 E-value=0.045 Score=34.30 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
T Consensus 49 ~l~h~lf~GPPG~GKTTl-AriiAk~~ 74 (234)
T pfam05496 49 ALDHVLLYGPPGLGKTTL-ANIIANEM 74 (234)
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHH
T ss_conf 766278878999988899-99999840