HHsearch alignment for GI: peg_409 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.23  E-value=0.045  Score=34.30  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=18.2

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             688879984888996799999999998
Q 537021.9.peg.4   30 PTRSAWVSANAGSGKTHILVQRVLRLL   56 (242)
Q Consensus        30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll   56 (242)
T Consensus        49 ~l~h~lf~GPPG~GKTTl-AriiAk~~   74 (234)
T pfam05496        49 ALDHVLLYGPPGLGKTTL-ANIIANEM   74 (234)
T ss_pred             CCCEEEEECCCCCCHHHH-HHHHHHHH
T ss_conf             766278878999988899-99999840